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putative_intron_HNH_endonuclease
Euk-VirAcanthamoeba_polyphaga_moumouvirus
putative_intron_HNH_endonuclease__YP_007354246__Acanthamoeba_polyphaga_moumouvirus__1269028
Identity
- Accession:
- YP_007354246 ↗
- Protein ID:
- putative_intron_HNH_endonuclease
- Kingdom:
- euk
Quality
76.7
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Imitervirales›
Mimiviridae›
Moumouvirus›
Acanthamoeba_polyphaga_moumouvirus
TaxID: 1269028
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-112
Domain cluster:
rep: OP056089.1__UYD72102.1__X__00002__D5-102
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13392.13 best | HNH_3 | 30.4 | 3.30e-07 | 45.7% | 97.8% |
D2
high
residues 122-171
Domain cluster:
rep: IMGVR_UViG_3300021426_000003-3300021426-Ga0224482_10000072181__D164-213
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF22083.3 best | I-HmuI_NUMOD-like | 33.6 | 3.30e-08 | 88.0% | 78.3% |
| PF07453.20 | NUMOD1 | 25.5 | 1.70e-05 | 72.0% | 75.7% |
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1u3eM02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.89 | 80.0 | 7.12e-01 | 100.0% | 70.6% |
| 3h5tA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.68 | 45.0 | 4.69e-01 | 70.0% | 93.6% |
| 1jceA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.68 | 44.0 | 3.08e-01 | 100.0% | 21.6% |
| 2xi8A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.61 | 54.0 | 4.94e-01 | 98.0% | 77.3% |
| 3oouA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.60 | 49.0 | 4.79e-01 | 98.0% | 81.8% |
| 2mtzA01 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.58 | 45.0 | 4.55e-01 | 84.0% | 92.0% |
| 1vx7000 | 2.30.170.20 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 | 0.57 | 32.0 | 3.01e-01 | 80.0% | 43.5% |
| 4uf0A03 | 2.10.110.20 | Mainly Beta › Ribbon › Cysteine Rich Protein › | 0.57 | 37.0 | 3.48e-01 | 100.0% | 52.3% |
| 2h6bA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 47.0 | 3.82e-01 | 96.0% | 59.4% |
| 5tjjA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 48.0 | 4.23e-01 | 98.0% | 71.2% |
| 1wgyA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.55 | 41.0 | 3.69e-01 | 86.0% | 96.1% |
| 4tv7D01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 45.0 | 3.88e-01 | 96.0% | 64.7% |
| 6uvuA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 44.0 | 3.51e-01 | 92.0% | 57.7% |
| 5c8qB02 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.54 | 44.0 | 4.61e-01 | 92.0% | 97.8% |
| 3gziA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 44.0 | 2.91e-01 | 98.0% | 22.2% |
| 3lsgA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.54 | 44.0 | 4.36e-01 | 96.0% | 90.9% |
| 2isyA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 45.0 | 3.30e-01 | 96.0% | 40.6% |
| 1ft9A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 44.0 | 3.86e-01 | 96.0% | 69.6% |
| 3tqnA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 44.0 | 3.95e-01 | 96.0% | 75.3% |
| 2l1aA00 | 3.10.20.530 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.52 | 36.0 | 3.07e-01 | 80.0% | 86.0% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2876 | 101.1.14.2 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › I-HmuI_NUMOD-like | 0.89 | 80.0 | 7.08e-01 | 100.0% | 69.6% |
| 4414927 | 101.1.14.3 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 | 0.89 | 80.0 | 7.09e-01 | 100.0% | 71.0% |
| 3171408 | 101.1.14.3 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 | 0.87 | 76.0 | 7.61e-01 | 98.0% | 96.0% |
| 4384880 | 101.1.14.3 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 | 0.83 | 74.0 | 6.21e-01 | 100.0% | 58.8% |
| 3587703 | 101.1.14.0 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases | 0.82 | 69.0 | 6.98e-01 | 100.0% | 94.0% |
| 3987930 | 101.1.4.2 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › LacI | 0.71 | 49.0 | 4.36e-01 | 72.0% | 67.1% |
| 3967719 | 101.1.1.18 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 | 0.65 | 45.0 | 4.54e-01 | 96.0% | 74.0% |
| 3976327 | 101.1.9.41 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › ORF6N | 0.64 | 44.0 | 4.63e-01 | 74.0% | 80.0% |
| 3437056 | 386.1.1.131 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_OTU1_C | 0.63 | 38.0 | 4.17e-01 | 100.0% | 78.9% |
| 5073915 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 42.0 | 4.85e-01 | 76.0% | 100.0% |
| 3339183 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.63 | 38.0 | 4.24e-01 | 100.0% | 85.7% |
| 4019552 | 2002.1.1.13 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red | 0.62 | 41.0 | 2.54e-01 | 70.0% | 17.8% |
| 3487102 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.59 | 35.0 | 3.88e-01 | 96.0% | 93.3% |
| 3903953 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.59 | 47.0 | 4.76e-01 | 88.0% | 92.0% |
| 3513182 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.58 | 47.0 | 3.62e-01 | 92.0% | 96.7% |
| 3587532 | 101.1.4.17 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_26 | 0.58 | 50.0 | 4.87e-01 | 98.0% | 90.9% |
| 3240617 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.55 | 44.0 | 4.15e-01 | 88.0% | 86.7% |
| 3703451 | 101.1.15.0 ↗ | alpha arrays › HTH › HTH › HAT1, C-terminal domain | 0.54 | 45.0 | 3.79e-01 | 96.0% | 61.1% |
| 5081162 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 45.0 | 3.79e-01 | 96.0% | 69.4% |
| 3425436 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 32.0 | 3.38e-01 | 94.0% | 75.0% |
D3
high
residues 183-284
Domain cluster:
rep: OP056089.1__UYD72102.1__X__00002__D5-102
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13392.13 best | HNH_3 | 27.2 | 3.20e-06 | 40.2% | 82.6% |