putative_intron_HNH_endonuclease

Euk-Vir

Acanthamoeba_polyphaga_moumouvirus

putative_intron_HNH_endonuclease__YP_007354247__Acanthamoeba_polyphaga_moumouvirus__1269028

Identity

78.1 mean pLDDT

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Imitervirales› Mimiviridae› Moumouvirus› Acanthamoeba_polyphaga_moumouvirus

TaxID: 1269028

View cluster (4 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 62-160

PDB

Domain cluster: rep: OP056089.1__UYD72102.1__X__00002__D5-102

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF13392.13 best	HNH_3	29.5	6.20e-07	46.5%	93.5%
PF07463.17	NUMOD4	44.8	1.60e-11	41.4%	95.9%

D2 high residues 170-217

PDB

Domain cluster: rep: OL505084.1__UIE13765.1__X__00060__D15-63

D3 high residues 229-329

PDB

Domain cluster: rep: OP056089.1__UYD72102.1__X__00002__D5-102

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF07463.17 best	NUMOD4	26.8	6.70e-06	43.6%	95.9%

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1u3eM01	3.90.75.20	Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A ›	0.92	80.0	7.86e-01	97.0%	85.8%
2qrdB01	2.20.25.290	Mainly Beta › Single Sheet › N-terminal domain of TfIIb ›	0.63	26.0	3.67e-01	84.2%	94.6%
4pkcC00	6.20.90.20	Special › Other non-globular › SH3 type barrels. › Benzylsuccinate synthase gamma subunit	0.58	26.0	3.68e-01	79.2%	100.0%
4dy0B02	2.30.39.10	Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1	0.57	28.0	2.64e-01	75.2%	35.9%
2qkdA03	2.20.25.420	Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain	0.53	24.0	3.15e-01	79.2%	78.4%
4ebrA00	3.30.1460.50	Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, ›	0.51	31.0	2.68e-01	78.2%	37.6%
1k8kA04	3.90.640.10	Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4	0.51	36.0	3.78e-01	73.3%	96.7%
1jcfA03	3.90.640.10	Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4	0.50	36.0	4.03e-01	92.1%	100.0%
3d9wA02	2.40.128.150	Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases	0.50	36.0	3.60e-01	99.0%	73.5%
4htgA03	3.30.160.40	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain	0.50	29.0	3.26e-01	92.1%	72.2%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3177145	216.1.1.0 ↗	a+b two layers › UBC-like › UBC-like › UBC-like	0.65	39.0	3.94e-01	78.2%	59.0%
3214307	3256.1.1.0 ↗	a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain	0.61	24.0	3.65e-01	71.3%	100.0%
3488611	383.1.2.0 ↗	few secondary structure elements › Defensin-like › Defensin-related › Laterosporulin	0.59	27.0	3.69e-01	79.2%	100.0%
4028728	375.1.1.21 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1	0.55	26.0	3.33e-01	70.3%	78.2%
3577271	11.1.1.97 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set	0.52	26.0	3.15e-01	86.1%	75.0%
None	—		0.52	36.0	2.70e-01	70.3%	92.4%
3627070	11.1.1.97 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set	0.52	27.0	3.27e-01	91.1%	80.0%
3530891	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.51	35.0	3.45e-01	70.3%	68.8%
4054729	330.4.1.1 ↗	a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC	0.51	29.0	3.31e-01	80.2%	73.3%