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putative_intron_encoded_endonuclease

Euk-Vir

Acanthamoeba_polyphaga_mimivirus

putative_intron_encoded_endonuclease__YP_003987014__Acanthamoeba_polyphaga_mimivirus__212035

Identity

Accession:
YP_003987014 ↗
Protein ID:
putative_intron_encoded_endonuclease
Kingdom:
euk

Quality

75.7 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Imitervirales› Mimiviridae› Mimivirus› Acanthamoeba_polyphaga_mimivirus

TaxID: 212035

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-135
PDB
Domain cluster: rep: BML_08182015_6_5m_scaffold_1_prodigal-single.1__X__X__00169__D1-120
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lb6C01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 31.0 3.65e-01 73.8% 65.9%
2zuoA08 2.30.30.620 Mainly Beta › Roll › SH3 type barrels. › 0.62 23.0 3.23e-01 78.6% 69.0%
3wcyA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 34.0 4.08e-01 71.4% 81.4%
4ecnA01 2.60.40.3540 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 0.59 33.0 3.62e-01 76.2% 65.0%
3g7mA00 2.60.110.10 Mainly Beta › Sandwich › Thaumatin › Thaumatin 0.58 34.0 3.19e-01 86.5% 46.4%
3dnhA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 38.0 3.63e-01 82.5% 55.6%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 39.0 3.71e-01 93.7% 61.2%
3qt2B03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 34.0 3.87e-01 77.0% 81.6%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.53 29.0 3.60e-01 73.0% 88.3%
1jx4A04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.52 37.0 4.12e-01 77.8% 94.9%
4eq3A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 37.0 3.99e-01 77.8% 86.1%
4dohE02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 35.0 3.82e-01 71.4% 82.1%
4nn5C02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 33.0 3.63e-01 79.4% 81.8%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.51 36.0 4.03e-01 77.0% 95.8%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2713759 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.59 33.0 3.80e-01 72.2% 77.0%
4963774 1.1.14.2 ↗ beta barrels › cradle loop barrel › RIFT-related › PTS system glucitol/sorbitol-specific IIA component-like › DUF371 0.57 41.0 4.04e-01 75.4% 97.9%
1138340 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.55 38.0 3.54e-01 82.5% 56.1%
3783477 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 38.0 4.12e-01 77.8% 82.7%
5075917 1.1.5.17 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.54 39.0 3.70e-01 85.7% 62.0%
3518607 10.32.1.68 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Glce_b_sandwich 0.54 40.0 3.65e-01 77.0% 89.7%
3413371 10.32.1.68 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Glce_b_sandwich 0.53 39.0 3.59e-01 77.0% 93.3%
2713758 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.53 34.0 3.28e-01 81.0% 53.3%
224981 11.1.1.129 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Interfer-bind 0.52 37.0 4.05e-01 77.8% 86.9%
3738955 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 37.0 3.97e-01 77.8% 83.6%
1165706 219.1.1.57 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CIF 0.51 38.0 3.45e-01 78.6% 76.7%
4300924 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.51 36.0 3.75e-01 77.0% 80.0%
3573883 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.51 38.0 3.82e-01 77.8% 89.6%
3449628 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.50 32.0 3.33e-01 82.5% 68.7%
D2 high residues 167-240
PDB
Domain cluster: rep: hypothetical_protein_BNJ_00111__YP_009352526__Kaumoebavirus_Viruses.__X__D211-269
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1okjB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.77 52.0 4.34e-01 89.2% 40.9%
2qpvA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.72 52.0 4.27e-01 75.7% 100.0%
4ktwA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.68 53.0 4.14e-01 89.2% 39.4%
2rqlA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.66 51.0 4.73e-01 91.9% 65.3%
2chrA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.66 51.0 4.38e-01 87.8% 60.6%
5n9bA01 2.60.40.2160 Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 1 0.65 50.0 4.02e-01 81.1% 63.5%
3tw8A01 3.30.450.200 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module 0.65 51.0 4.23e-01 89.2% 46.4%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.64 48.0 4.10e-01 81.1% 48.0%
4o89A02 3.30.360.20 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › RNA 3'-terminal phosphate cyclase, insert domain 0.64 48.0 4.48e-01 82.4% 97.9%
1r0mA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.64 51.0 4.31e-01 89.2% 52.3%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.64 45.0 4.47e-01 75.7% 70.9%
4uuwA03 3.90.950.20 Alpha Beta › Alpha-Beta Complex › Maf protein › CinA-like 0.61 50.0 4.01e-01 90.5% 52.4%
4bs9A05 3.30.160.660 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 45.0 4.03e-01 87.8% 53.5%
1ae2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 43.0 4.10e-01 83.8% 64.0%
5kolD00 3.90.950.20 Alpha Beta › Alpha-Beta Complex › Maf protein › CinA-like 0.60 51.0 3.97e-01 95.9% 46.5%
4gn2A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.60 50.0 3.60e-01 94.6% 41.7%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 41.0 3.32e-01 70.3% 100.0%
3cyjA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.60 47.0 4.04e-01 86.5% 54.9%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 42.0 3.80e-01 86.5% 52.4%
8aa9A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 48.0 4.22e-01 89.2% 81.6%
2nugB02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 40.0 4.07e-01 85.1% 71.8%
3mqqB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 40.0 3.48e-01 70.3% 83.9%
2pgeA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.59 47.0 4.06e-01 90.5% 56.7%
3gd6A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.59 48.0 3.94e-01 91.9% 48.6%
4dduA07 2.60.510.20 Mainly Beta › Sandwich › EV matrix protein fold › 0.58 47.0 4.18e-01 87.8% 61.7%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 41.0 4.00e-01 91.9% 66.3%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 42.0 4.33e-01 86.5% 81.7%
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.57 44.0 2.87e-01 82.4% 34.9%
3azoA02 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 45.0 3.10e-01 87.8% 94.3%
1di2A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 38.0 3.99e-01 78.4% 75.4%
1vl4A01 3.30.2290.10 Alpha Beta › 2-Layer Sandwich › PmbA/TldD fold › PmbA/TldD superfamily 0.56 44.0 3.29e-01 89.2% 82.9%
1o7iB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 43.0 3.84e-01 87.8% 75.4%
2k5vA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 37.0 3.44e-01 81.1% 52.0%
7r97A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 38.0 3.96e-01 82.4% 82.4%
2dmyA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 38.0 3.54e-01 79.7% 56.7%
3rd4B00 2.40.50.660 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 45.0 4.42e-01 93.2% 87.8%
2akjA03 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.54 41.0 3.50e-01 86.5% 49.6%
4jbmB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 41.0 3.82e-01 86.5% 83.3%
1ihjA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.53 40.0 3.77e-01 83.8% 76.6%
3p0cA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 44.0 3.87e-01 93.2% 82.0%
3wa5B00 2.60.120.1690 Mainly Beta › Sandwich › Jelly Rolls › 0.52 44.0 3.77e-01 95.9% 58.9%
2l33A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 36.0 3.47e-01 81.1% 60.4%
1gyvA00 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.52 41.0 3.62e-01 90.5% 75.8%
1uhzA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 37.0 3.54e-01 82.4% 62.9%
3gw6D02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 37.0 2.87e-01 75.7% 91.3%
2ciuA00 3.10.450.320 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 0.52 40.0 3.48e-01 86.5% 95.9%
3f02B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.51 36.0 3.27e-01 74.3% 69.0%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.51 37.0 3.43e-01 78.4% 98.0%
5xc5A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 42.0 3.30e-01 93.2% 42.5%
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.51 46.0 3.43e-01 100.0% 67.4%
ECOD (75)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4007983 252.2.1.5 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_3 0.75 53.0 4.87e-01 78.4% 57.9%
4995163 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.74 54.0 3.72e-01 87.8% 23.7%
3648413 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 43.0 4.07e-01 89.2% 50.0%
4936010 2484.1.1.59 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.69 57.0 3.70e-01 89.2% 20.6%
3641525 223.2.1.6 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN 0.69 59.0 4.51e-01 100.0% 49.2%
4015435 2.1.1.44 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.69 47.0 4.33e-01 75.7% 54.7%
4646999 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.66 54.0 5.27e-01 93.2% 81.9%
4054729 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.65 50.0 5.03e-01 89.2% 82.7%
4343392 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 45.0 3.91e-01 89.2% 48.2%
5063919 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.65 44.0 3.76e-01 70.3% 73.3%
5844 218.1.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.64 51.0 4.46e-01 89.2% 58.1%
4927936 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 44.0 4.25e-01 82.4% 63.5%
3565284 223.2.1.21 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › AP-5_subunit_s1 0.63 55.0 4.08e-01 100.0% 73.5%
5032200 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.63 42.0 3.82e-01 75.7% 49.5%
3404941 220.1.1.15 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › BBL5 0.63 52.0 4.02e-01 93.2% 41.2%
3642022 218.1.1.2 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N 0.63 48.0 4.46e-01 86.5% 77.0%
4959715 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 47.0 3.00e-01 82.4% 27.0%
3507177 2484.1.1.204 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27046, PF27073 0.62 46.0 2.90e-01 79.7% 58.6%
4989872 2484.1.1.59 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.62 50.0 3.22e-01 91.9% 17.9%
5013176 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.62 42.0 4.22e-01 86.5% 70.7%
3596829 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.62 47.0 4.04e-01 87.8% 52.2%
5036294 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 43.0 3.91e-01 77.0% 54.0%
3743261 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 47.0 4.10e-01 86.5% 78.3%
3596066 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 54.0 4.55e-01 100.0% 82.4%
3788514 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 52.0 4.06e-01 95.9% 55.0%
3614844 220.1.1.15 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › BBL5 0.60 44.0 3.65e-01 79.7% 43.6%
3735671 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.60 47.0 4.32e-01 87.8% 72.0%
3962245 881.1.1.26 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF7373 0.60 50.0 4.31e-01 94.6% 90.8%
4956351 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 45.0 2.78e-01 82.4% 17.9%
4608418 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.60 43.0 4.20e-01 82.4% 68.2%
4964487 218.1.1.12 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › PF26684 0.59 45.0 3.99e-01 86.5% 55.5%
3508989 2484.1.1.230 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27073 0.59 45.0 3.56e-01 82.4% 43.2%
3638304 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.59 49.0 4.17e-01 93.2% 88.8%
5059491 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.59 46.0 3.35e-01 83.8% 67.5%
5066014 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.59 47.0 3.82e-01 87.8% 62.8%
3577911 220.1.1.15 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › BBL5 0.59 45.0 3.69e-01 83.8% 44.1%
3658408 4325.1.1.13 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF4371 0.59 40.0 4.08e-01 73.0% 89.3%
3259407 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.59 47.0 4.57e-01 91.9% 83.5%
5081844 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 43.0 3.74e-01 79.7% 69.2%
3924083 2484.1.1.204 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27046, PF27073 0.58 45.0 3.45e-01 83.8% 38.2%
4952885 3414.1.1.13 ↗ beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › PF29994 0.58 35.0 3.26e-01 83.8% 46.3%
3505248 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.57 41.0 3.72e-01 82.4% 55.0%
3197622 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.57 42.0 3.79e-01 79.7% 55.2%
4034138 7520.1.1.0 ↗ a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like 0.57 50.0 4.12e-01 98.6% 55.6%
4954091 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.57 44.0 3.88e-01 87.8% 75.0%
5062351 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 45.0 4.01e-01 90.5% 83.5%
4942076 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.57 44.0 3.87e-01 86.5% 82.6%
5058918 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 44.0 3.86e-01 86.5% 72.2%
3802472 5.1.3.144 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.56 45.0 3.01e-01 87.8% 26.6%
3466584 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 40.0 4.15e-01 75.7% 86.2%
5064437 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 41.0 3.66e-01 79.7% 71.8%
3801624 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.56 42.0 3.86e-01 87.8% 61.0%
4950394 3414.1.1.13 ↗ beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › PF29994 0.56 34.0 3.04e-01 83.8% 42.9%
4975879 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 44.0 3.90e-01 87.8% 82.7%
4173753 246.1.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase 0.55 45.0 3.28e-01 91.9% 63.1%
3706903 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.55 44.0 3.63e-01 93.2% 68.0%
None — 0.55 45.0 2.81e-01 94.6% 44.6%
4982872 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.54 43.0 3.85e-01 89.2% 83.6%
4974920 2.1.1.76 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.54 36.0 3.36e-01 82.4% 52.0%
4951393 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 42.0 3.85e-01 86.5% 83.0%
4853066 2.1.1.22 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › HIN 0.54 41.0 3.68e-01 86.5% 73.5%
5020459 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 37.0 3.42e-01 81.1% 53.5%
3838659 5085.1.1.0 ↗ a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.54 45.0 2.77e-01 89.2% 70.2%
3603253 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.53 41.0 3.78e-01 87.8% 81.9%
3510700 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.53 42.0 3.90e-01 90.5% 68.0%
3907753 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 41.0 3.65e-01 86.5% 73.6%
5020458 2.1.1.111 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ssb-like_OB 0.53 42.0 3.74e-01 89.2% 80.0%
3864913 218.1.1.2 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N 0.53 47.0 3.71e-01 100.0% 67.7%
3705600 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.52 45.0 3.75e-01 94.6% 72.3%
3590584 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.52 46.0 3.74e-01 95.9% 73.3%
5050058 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 40.0 3.16e-01 87.8% 52.0%
4930094 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.52 38.0 3.51e-01 82.4% 77.1%
5016163 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.51 39.0 3.50e-01 86.5% 76.4%
3516513 109.2.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid 0.51 44.0 2.54e-01 98.6% 66.8%
5030959 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.50 37.0 3.62e-01 78.4% 72.5%