←Back to structures

putative_lipocalin

Euk-Vir

Acanthamoeba_polyphaga_mimivirus

putative_lipocalin__YP_003987412__Acanthamoeba_polyphaga_mimivirus__212035

Identity

Accession:
YP_003987412 ↗
Protein ID:
putative_lipocalin
Kingdom:
euk

Quality

79.2 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Imitervirales› Mimiviridae› Mimivirus› Acanthamoeba_polyphaga_mimivirus

TaxID: 212035

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-168
PDB
Domain cluster: rep: Lipocalin_domain_containing_protein__YP_009481489__Pandoravirus_macleodensis__2107707__D55-199
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF08212.19 best Lipocalin_2 118.8 2.70e-34 95.9% 97.3%
PF00061.30 Lipocalin 23.5 7.70e-05 91.8% 96.5%
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qwdB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.89 86.0 8.15e-01 100.0% 97.0%
1z24A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.83 79.0 7.17e-01 99.3% 82.0%
2hzrA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.83 78.0 7.52e-01 100.0% 89.4%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.82 72.0 7.33e-01 94.6% 93.7%
1aqbA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.82 78.0 7.27e-01 100.0% 90.9%
1h91A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.80 77.0 7.07e-01 100.0% 84.4%
1lf7A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.80 72.0 6.91e-01 100.0% 84.8%
2cm4A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.80 71.0 7.23e-01 100.0% 95.2%
1lkeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.80 75.0 7.36e-01 100.0% 93.0%
4ge1C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.79 75.0 6.74e-01 100.0% 83.4%
3cqnB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.78 74.0 7.19e-01 100.0% 92.5%
1dfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.78 73.0 6.90e-01 100.0% 88.4%
1ew3A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.76 71.0 6.94e-01 100.0% 92.5%
2kt4B01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.75 67.0 6.89e-01 94.6% 98.6%
3l4rA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.75 68.0 6.81e-01 96.6% 94.0%
1bebA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.75 70.0 6.85e-01 100.0% 93.6%
4xmeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.75 70.0 6.42e-01 99.3% 85.9%
4wfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.74 68.0 6.71e-01 98.0% 94.1%
2ra6C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.74 64.0 6.57e-01 92.5% 95.1%
4boeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.73 67.0 6.65e-01 98.0% 93.5%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.73 46.0 5.72e-01 78.2% 100.0%
1e5pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.72 64.0 6.45e-01 95.2% 94.0%
1dzkA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.72 64.0 6.39e-01 95.2% 93.9%
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.72 51.0 5.90e-01 80.3% 100.0%
6x1kA01 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.67 48.0 5.41e-01 74.8% 99.1%
3uaqB02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.63 46.0 4.50e-01 75.5% 100.0%
1wubA00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.63 47.0 4.44e-01 76.9% 95.5%
2o62A02 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 48.0 4.97e-01 81.0% 100.0%
1y0gA00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.61 45.0 4.37e-01 76.9% 97.0%
3f40A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 36.0 4.11e-01 72.1% 90.1%
1tuhA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 39.0 4.15e-01 75.5% 93.1%
1i78B00 2.40.128.90 Mainly Beta › Beta Barrel › Lipocalin › OMPT-like 0.53 46.0 3.75e-01 95.2% 90.6%
3fsdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 37.0 4.02e-01 72.1% 98.3%
3b7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 37.0 4.11e-01 74.1% 100.0%
2d4rA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 43.0 4.38e-01 89.1% 90.4%
6ka3A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 42.0 4.28e-01 87.1% 94.6%
3ub1D02 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 35.0 3.91e-01 72.1% 88.6%
2wjqA00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.51 45.0 4.07e-01 95.2% 86.3%
4fqeA00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.51 43.0 4.13e-01 91.8% 95.3%
3fkaB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 36.0 3.98e-01 73.5% 95.8%
3bdrA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 45.0 4.44e-01 98.0% 95.5%
1vwxT01 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.50 27.0 3.21e-01 81.0% 76.3%
2oc3A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.50 41.0 3.40e-01 89.1% 75.6%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4875038 9.1.1.11 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 0.88 84.0 8.36e-01 98.6% 99.3%
842 9.1.1.11 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 0.88 85.0 8.04e-01 100.0% 96.4%
3973757 9.1.1.11 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 0.88 85.0 8.22e-01 100.0% 93.8%
3386946 9.1.1.11 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 0.87 82.0 8.21e-01 99.3% 96.6%
4022437 9.1.1.11 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 0.85 82.0 7.83e-01 100.0% 95.2%
3416185 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.85 82.0 7.43e-01 100.0% 90.3%
4262684 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.85 82.0 7.51e-01 100.0% 85.0%
3455003 9.1.1.11 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 0.85 80.0 7.11e-01 98.6% 82.9%
3691111 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.85 81.0 7.60e-01 100.0% 97.1%
None — 0.85 80.0 7.24e-01 98.6% 86.8%
3407007 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.84 81.0 7.64e-01 100.0% 89.4%
846 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.83 79.0 7.17e-01 99.3% 82.0%
3933857 9.1.1.48 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_10 0.82 78.0 6.80e-01 100.0% 74.3%
3618840 9.1.1.48 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_10 0.82 78.0 6.79e-01 100.0% 74.8%
169663 9.1.1.11 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 0.82 75.0 7.37e-01 100.0% 90.4%
154696 9.1.1.2 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Nitrophorin 0.80 75.0 6.73e-01 99.3% 82.6%
4577518 9.1.1.3 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › His_binding 0.80 75.0 6.96e-01 100.0% 91.7%
3906040 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.79 74.0 7.04e-01 100.0% 88.2%
2792228 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.78 73.0 7.11e-01 100.0% 95.1%
3548672 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.77 73.0 7.16e-01 100.0% 95.5%
3845688 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.76 71.0 6.95e-01 100.0% 91.9%
4887870 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.76 72.0 6.88e-01 100.0% 89.1%
3851797 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.76 71.0 6.81e-01 100.0% 90.3%
3754415 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.76 70.0 6.84e-01 100.0% 91.8%
3646333 9.1.1.34 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › PAP_fibrillin 0.76 62.0 5.60e-01 85.7% 77.4%
1545158 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.75 69.0 6.81e-01 99.3% 94.1%
3453774 9.23.1.4 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › PAP_fibrillin 0.72 56.0 5.38e-01 81.6% 81.1%
3780792 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.71 54.0 6.02e-01 79.6% 100.0%
3487199 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.69 50.0 5.79e-01 80.3% 100.0%
2045057 9.5.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein TT1927B › Hypothetical protein TT1927B › YceI 0.66 47.0 4.60e-01 73.5% 100.0%
864 9.5.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein TT1927B › Hypothetical protein TT1927B › YceI 0.63 47.0 4.44e-01 76.9% 95.5%
3725709 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 36.0 4.12e-01 71.4% 76.4%
852 9.1.1.29 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › BFA1_C 0.62 48.0 4.97e-01 81.0% 100.0%
4372560 71.1.1.6 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LppX_LprAFG 0.58 46.0 4.13e-01 83.0% 96.1%
4983588 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.58 26.0 3.45e-01 71.4% 78.7%
5049731 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.57 47.0 4.56e-01 86.4% 90.6%
4018988 3794.1.1.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.53 40.0 4.17e-01 78.9% 85.0%
4026812 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.52 43.0 4.19e-01 91.8% 80.6%
3789706 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.51 45.0 4.34e-01 95.9% 88.8%
4318843 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.51 43.0 4.41e-01 91.2% 92.4%
3809562 883.1.1.20 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › SMP_MUG190-like 0.51 42.0 3.82e-01 89.1% 83.5%
3619070 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.51 45.0 4.33e-01 95.9% 87.9%
4289286 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.51 42.0 4.21e-01 91.2% 86.7%
3403106 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.51 44.0 4.28e-01 94.6% 86.7%