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putative_lon_protease

Euk-Vir

Aureococcus_anophagefferens_virus

putative_lon_protease__YP_009052120__Aureococcus_anophagefferens_virus__1474867

Identity

Accession:
YP_009052120 ↗
Protein ID:
putative_lon_protease
Kingdom:
euk

Quality

70.9 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Imitervirales› Schizomimiviridae› Kratosvirus› Aureococcus_anophagefferens_virus

TaxID: 1474867

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-117
PDB
D2 high residues 329-474
PDB
Domain cluster: rep: NC_021330__YP_008059651.1__M202-gp129__00089__D21-171
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF00004.36 best AAA 49.0 1.20e-12 97.3% 93.1%
PF07728.21 AAA_5 25.1 2.20e-05 94.5% 96.4%
D3 high residues 582-767
PDB
Domain cluster: rep: CAKLQF020000026.1__CAH1092387.1__SAMEA5780031_03519__00001__D3-168
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF05362.20 best Lon_C 157.0 7.00e-46 100.0% 84.9%
PF13541.13 ChlI 28.4 1.80e-06 71.0% 90.1%
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2x36D00 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.92 84.0 8.64e-01 100.0% 98.3%
1z0bA00 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.89 80.0 7.76e-01 100.0% 84.7%
1xhkA00 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.86 79.0 8.00e-01 100.0% 96.8%
8eilD01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.85 74.0 7.75e-01 98.4% 99.4%
8dvhB01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.84 79.0 8.08e-01 98.4% 100.0%
4fw9A03 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.83 80.0 7.17e-01 100.0% 78.5%
2hfsA01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.57 48.0 4.88e-01 89.8% 96.1%
1y60A00 3.30.230.60 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › Formaldehyde-activating enzyme 0.56 42.0 4.41e-01 76.3% 94.6%
2fp4A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 34.0 4.14e-01 95.2% 95.9%
4uskA01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.53 45.0 4.52e-01 91.4% 96.9%
1h72C01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.53 43.0 4.57e-01 99.5% 97.5%
1oj4A01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.52 43.0 4.57e-01 89.2% 100.0%
2a2cA01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.52 44.0 4.25e-01 93.0% 96.3%
3gonA01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.51 46.0 4.59e-01 99.5% 95.4%
4p52A01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.51 43.0 4.35e-01 92.5% 93.3%
2v8pA01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.51 40.0 4.30e-01 89.8% 98.7%
1j09A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.51 32.0 3.83e-01 94.1% 95.9%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4948926 3010.1.1.2 ↗ a/b three-layered sandwiches › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › Lon_C 0.92 84.0 8.56e-01 98.4% 96.6%
4949088 3010.1.1.2 ↗ a/b three-layered sandwiches › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › Lon_C 0.92 83.0 8.36e-01 98.4% 92.9%
4864919 212.1.1.32 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › ChlI 0.85 53.0 6.70e-01 70.4% 100.0%
4954666 3010.1.1.0 ↗ a/b three-layered sandwiches › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains 0.82 37.0 5.57e-01 90.9% 95.3%
3513926 3010.1.1.2 ↗ a/b three-layered sandwiches › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › Lon_C 0.76 66.0 6.94e-01 90.9% 97.6%
3284830 3010.1.1.2 ↗ a/b three-layered sandwiches › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › Lon_C 0.71 59.0 6.25e-01 93.0% 94.7%
3590097 3010.1.1.2 ↗ a/b three-layered sandwiches › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › Lon_C 0.70 56.0 6.20e-01 91.4% 98.7%
3590242 2007.24.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › AtpF-like › AtpF-like › ATP-synt_F 0.67 29.0 3.89e-01 94.1% 72.8%
4252416 212.1.1.6 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal_S9 0.60 37.0 4.50e-01 99.5% 94.9%
3453197 7542.1.1.0 ↗ a/b three-layered sandwiches › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain 0.59 32.0 3.96e-01 98.4% 82.5%
5009446 2007.2.5.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase › Rhodanese 0.56 27.0 3.40e-01 96.2% 73.6%
3288171 212.1.1.3 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.55 46.0 4.82e-01 89.8% 99.4%
5052471 212.1.1.3 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.54 46.0 4.29e-01 91.4% 95.7%
4500515 212.1.1.3 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.54 49.0 4.85e-01 97.8% 98.5%
4988469 212.1.1.3 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.53 43.0 4.61e-01 91.9% 99.4%
4990624 212.1.1.3 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.53 45.0 4.69e-01 91.4% 99.4%
5073860 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.53 33.0 3.70e-01 95.7% 79.9%
3261695 212.1.1.3 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.53 45.0 4.18e-01 91.4% 93.2%
4014103 212.1.1.0 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.53 45.0 4.53e-01 91.4% 98.9%
4380590 212.1.1.3 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.52 43.0 4.60e-01 90.3% 100.0%
4183840 212.1.1.4 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N,GalKase_gal_bdg 0.52 44.0 4.37e-01 91.4% 90.0%
4234779 212.1.1.3 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.52 43.0 4.51e-01 92.5% 96.5%
3365430 212.1.1.3 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.52 45.0 4.40e-01 92.5% 99.0%
3223584 212.1.1.3 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.52 43.0 4.11e-01 90.3% 92.7%
None — 0.50 43.0 4.37e-01 91.4% 98.9%
D4 medium residues 200-269
PDB
D5 medium residues 491-522_542-568
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5expA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.57 49.0 4.50e-01 98.3% 84.4%
2ztjA02 4.10.430.20 Few Secondary Structures › Irregular › H-NS DNA Binding Protein › 0.53 25.0 2.74e-01 74.6% 44.9%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4101608 148.1.3.48 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Lon_lid 0.81 73.0 6.29e-01 100.0% 83.3%
4128497 148.1.3.48 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Lon_lid 0.81 73.0 6.28e-01 100.0% 84.4%
4513308 148.1.3.48 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Lon_lid 0.80 71.0 6.14e-01 100.0% 84.4%
185853 4312.1.1.8 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › REGB_T4 0.60 53.0 3.93e-01 100.0% 83.0%