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putative_matrix

Euk-Vir

Long_Island_tick_rhabdovirus

putative_matrix__YP_009094015__Long_Island_tick_rhabdovirus__1459044

Identity

Accession:
YP_009094015 ↗
Protein ID:
putative_matrix
Kingdom:
euk

Quality

82.6 mean pLDDT

Cluster

View cluster (29 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 52-204
PDB
Domain cluster: rep: matrix__YP_010087311__Muir_Springs_virus__932700__D68-219
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1lg7A00 3.10.460.10 Alpha Beta › Roll › VSV matrix protein › VSV matrix protein 0.85 81.0 7.89e-01 100.0% 96.3%
2w2sA00 3.10.460.20 Alpha Beta › Roll › VSV matrix protein › Rhabdovirus matrix protein M2 0.80 75.0 7.33e-01 100.0% 93.9%
6iomB01 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.78 28.0 4.08e-01 73.2% 68.8%
2f1fA02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.59 31.0 4.24e-01 77.1% 100.0%
6u9hF02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.57 30.0 4.06e-01 77.1% 100.0%
2fbjH02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 22.0 3.20e-01 77.1% 76.7%
4r6uA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 31.0 3.58e-01 73.9% 77.7%
2nyiA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.55 33.0 4.05e-01 75.8% 100.0%
1rzmA01 3.30.70.1140 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phospho-2-dehydro-3-deoxyheptonate aldolase; domain 1 0.54 26.0 3.43e-01 73.2% 85.0%
3p9vA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 37.0 3.75e-01 70.6% 100.0%
1f3vA00 3.30.70.680 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › TRADD, N-terminal domain 0.53 45.0 4.47e-01 91.5% 95.6%
7e6gA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.52 39.0 4.00e-01 82.4% 80.5%
1azsA00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.52 39.0 3.68e-01 99.3% 64.2%
2wz1B00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.50 39.0 3.67e-01 98.7% 65.3%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
169957 845.1.1.0 ↗ a+b complex topology › VSV matrix protein › VSV matrix protein › VSV matrix protein 0.87 83.0 7.69e-01 100.0% 89.1%
2966642 845.1.1.2 ↗ a+b complex topology › VSV matrix protein › VSV matrix protein › VSV matrix protein › Vesiculo_matrix 0.86 82.0 7.52e-01 100.0% 86.8%
184954 845.1.1.0 ↗ a+b complex topology › VSV matrix protein › VSV matrix protein › VSV matrix protein 0.80 75.0 7.33e-01 100.0% 93.9%
4598977 230.2.1.0 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C 0.67 29.0 3.48e-01 75.8% 58.2%
4153628 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.67 29.0 3.47e-01 75.8% 58.2%
4149478 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.67 29.0 3.32e-01 75.8% 53.3%
4940890 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.66 30.0 3.34e-01 76.5% 53.6%
4946247 304.57.1.0 ↗ a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like 0.61 41.0 4.76e-01 74.5% 99.0%
4219210 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.60 41.0 4.69e-01 75.8% 97.3%
4605207 304.57.1.0 ↗ a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like 0.58 39.0 4.43e-01 74.5% 90.4%
4936039 304.51.1.0 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related 0.58 41.0 4.65e-01 80.4% 99.1%
3844965 304.47.1.1 ↗ a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA 0.57 44.0 4.52e-01 81.0% 93.3%
3918813 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.56 45.0 4.79e-01 98.0% 97.0%
4939612 304.51.1.0 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related 0.55 39.0 4.36e-01 78.4% 96.5%
5031797 321.1.1.1 ↗ a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › Gln-synt_C 0.55 42.0 3.19e-01 79.7% 56.4%
3605908 304.31.1.3 ↗ a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase › FAZ1_cons 0.54 39.0 4.31e-01 75.2% 99.2%
4317100 230.2.1.2 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › VAR1 0.54 29.0 3.38e-01 75.2% 71.3%
4002543 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 32.0 3.73e-01 73.9% 86.7%
3471357 304.133.1.0 ↗ a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein 0.51 34.0 3.69e-01 77.8% 83.3%
3971024 309.1.1.9 ↗ a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › PQQ_syn_pqqF_N_2 0.50 38.0 3.57e-01 79.1% 78.4%
3706034 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.50 38.0 3.96e-01 79.1% 97.1%
3596679 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.50 39.0 3.89e-01 80.4% 98.1%