←Back to structures
putative_nucleic_acid-binding_protein
Euk-VirCherry_mottle_leaf_virus
putative_nucleic_acid-binding_protein__NP_062431__Cherry_mottle_leaf_virus__131226
Identity
- Accession:
- NP_062431 ↗
- Protein ID:
- putative_nucleic_acid-binding_protein
- Kingdom:
- euk
Quality
71.6
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Alsuviricetes›
Tymovirales›
Betaflexiviridae›
Trichovirus›
Cherry_mottle_leaf_virus
TaxID: 131226
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 9-49
Domain cluster:
representative
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2dt8A01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.95 | 68.0 | 4.47e-01 | 75.6% | 20.8% |
| 3lupA01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.93 | 70.0 | 4.54e-01 | 80.5% | 21.3% |
| 2g7zA01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.92 | 69.0 | 4.53e-01 | 80.5% | 21.3% |
| 3nctA00 | 3.40.50.11880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Plasmid SOS inhibition protein | 0.90 | 68.0 | 4.56e-01 | 80.5% | 24.1% |
| 1mjtB01 | 3.90.340.10 | Alpha Beta › Alpha-Beta Complex › Nitric Oxide Synthase; Chain A, domain 1 › Nitric Oxide Synthase; Chain A, domain 1 | 0.87 | 73.0 | 5.06e-01 | 92.7% | 30.2% |
| 3l9wA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.87 | 75.0 | 4.95e-01 | 100.0% | 25.2% |
| 3g3oA00 | 3.20.100.30 | Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › VTC, catalytic tunnel domain | 0.84 | 74.0 | 4.41e-01 | 100.0% | 14.6% |
| 7ocsB01 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.83 | 62.0 | 4.05e-01 | 90.2% | 19.7% |
| 3iylU02 | 1.10.287.1520 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.82 | 69.0 | 6.47e-01 | 100.0% | 79.2% |
| 6m36O01 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.82 | 68.0 | 5.27e-01 | 100.0% | 42.7% |
| 3of4A00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.81 | 70.0 | 4.40e-01 | 100.0% | 20.8% |
| 2j5iA02 | 6.10.250.2850 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.81 | 61.0 | 6.25e-01 | 92.7% | 89.5% |
| 4xomB00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.81 | 71.0 | 4.44e-01 | 100.0% | 58.0% |
| 4kb2A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.80 | 71.0 | 5.15e-01 | 100.0% | 42.2% |
| 1vwxr00 | 3.30.390.110 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.79 | 66.0 | 4.71e-01 | 97.6% | 32.0% |
| 1z19A01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.79 | 67.0 | 5.06e-01 | 100.0% | 40.0% |
| 1rkbA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.77 | 56.0 | 3.66e-01 | 80.5% | 19.1% |
| 1dcnA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.76 | 59.0 | 5.06e-01 | 92.7% | 51.4% |
| 2nn4A00 | 1.10.287.760 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like | 0.74 | 60.0 | 5.23e-01 | 90.2% | 62.9% |
| 1t7lB01 | 3.20.20.210 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.73 | 62.0 | 3.59e-01 | 100.0% | 11.6% |
| 2lqxA00 | 6.10.250.1700 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.73 | 56.0 | 5.67e-01 | 97.6% | 85.4% |
| 3sllA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.71 | 58.0 | 5.28e-01 | 100.0% | 100.0% |
| 2va8A03 | 1.10.3380.30 | Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › | 0.70 | 62.0 | 3.86e-01 | 100.0% | 46.8% |
| 2yevA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.68 | 55.0 | 4.55e-01 | 90.2% | 52.7% |
| 4qmaA01 | 1.20.5.440 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain | 0.68 | 55.0 | 5.59e-01 | 92.7% | 95.0% |
| 3e22A03 | 1.10.287.600 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.68 | 59.0 | 5.42e-01 | 100.0% | 94.4% |
| 1t98A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 49.0 | 4.05e-01 | 87.8% | 47.1% |
| 2l35A00 | 1.10.287.770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like | 0.67 | 56.0 | 4.97e-01 | 100.0% | 73.0% |
| 4h8aB01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.66 | 50.0 | 4.60e-01 | 90.2% | 63.3% |
| 2dodA00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.66 | 55.0 | 4.48e-01 | 97.6% | 61.0% |
| 1l5jA03 | 3.40.1060.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aconitase; Domain 2 › Aconitase, Domain 2 | 0.65 | 56.0 | 3.64e-01 | 97.6% | 22.5% |
| 4rg8A04 | 1.10.287.1240 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.64 | 50.0 | 4.41e-01 | 95.1% | 58.1% |
| 1pixA03 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.63 | 53.0 | 3.20e-01 | 100.0% | 14.0% |
| 1rajA01 | 4.10.880.10 | Few Secondary Structures › Irregular › Poliovirus 3D polymerase; domain 1 (Nucleotidyltransferase) › Poliovirus 3D polymerase Domain 1 (Nucleotidyltransferase) | 0.54 | 41.0 | 4.08e-01 | 82.9% | 81.8% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3211845 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.95 | 80.0 | 8.12e-01 | 90.2% | 92.5% |
| 3483031 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.95 | 86.0 | 7.48e-01 | 100.0% | 68.3% |
| 3385053 | 5076.2.1.10 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › PF29520 | 0.92 | 83.0 | 4.92e-01 | 100.0% | 15.2% |
| 4417274 | 2010.1.1.1 ↗ | a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV | 0.91 | 70.0 | 4.55e-01 | 82.9% | 21.3% |
| 4198887 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.91 | 81.0 | 5.91e-01 | 100.0% | 39.0% |
| 4016157 | 6026.1.1.1 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › cwf21 | 0.91 | 80.0 | 5.46e-01 | 100.0% | 30.4% |
| 3423700 | 6026.1.1.0 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain | 0.88 | 73.0 | 7.14e-01 | 92.7% | 84.4% |
| 3882597 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.87 | 75.0 | 5.86e-01 | 100.0% | 45.6% |
| 3926800 | 3443.1.1.0 ↗ | alpha duplicates or obligate multimers › Get5 carboxyl domain › Get5 carboxyl domain › Get5 carboxyl domain | 0.87 | 79.0 | 6.89e-01 | 100.0% | 68.3% |
| 4585489 | 3826.1.1.25 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › GlutR_dimer | 0.86 | 75.0 | 6.02e-01 | 100.0% | 51.2% |
| 3643105 | 6026.1.1.1 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › cwf21 | 0.84 | 72.0 | 4.86e-01 | 100.0% | 26.5% |
| 4996648 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.82 | 71.0 | 4.78e-01 | 100.0% | 26.4% |
| 4012507 | 2004.1.1.50 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin | 0.81 | 71.0 | 4.49e-01 | 97.6% | 22.6% |
| 3491670 | 614.1.1.0 ↗ | alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain | 0.79 | 65.0 | 5.91e-01 | 100.0% | 69.1% |
| 3486312 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.74 | 65.0 | 4.65e-01 | 100.0% | 35.3% |
| 5065070 | 192.15.1.3 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Vps23_core | 0.71 | 61.0 | 5.27e-01 | 97.6% | 63.1% |
| 4101335 | 2006.1.4.8 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_5 | 0.70 | 58.0 | 3.71e-01 | 100.0% | 36.9% |
| 4990523 | 129.1.1.15 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › P5CR_dimer | 0.70 | 58.0 | 4.47e-01 | 97.6% | 41.1% |
| 4318142 | 230.3.1.1 ↗ | a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS | 0.70 | 55.0 | 3.80e-01 | 90.2% | 25.7% |
D2
medium
residues 57-134