←Back to structures
putative_nucleic_acid-binding_protein
Euk-VirAgave_tequilana_leaf_virus
putative_nucleic_acid-binding_protein__YP_009373232__Agave_tequilana_leaf_virus__387423
Identity
- Accession:
- YP_009373232 ↗
- Protein ID:
- putative_nucleic_acid-binding_protein
- Kingdom:
- euk
Quality
74.9
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Alsuviricetes›
Tymovirales›
Betaflexiviridae›
Vitivirus›
Agave_tequilana_leaf_virus
TaxID: 387423
Cluster
View cluster (8 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-89
Domain cluster:
rep: nucleic_acid_binding_protein__NP_659017__Garlic_virus_E__150285__D51-125
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3gaeA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.58 | 43.0 | 3.12e-01 | 81.5% | 70.8% |
| 6m20C01 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.55 | 47.0 | 2.98e-01 | 100.0% | 66.3% |
| 3i1aA03 | 1.20.58.840 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 36.0 | 3.25e-01 | 70.4% | 94.8% |
| 1eljA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.50 | 40.0 | 3.15e-01 | 90.1% | 43.7% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3812781 | 2004.1.1.417 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 | 0.57 | 49.0 | 3.49e-01 | 97.5% | 49.6% |
| 3451517 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.57 | 48.0 | 3.50e-01 | 97.5% | 49.8% |
| 4346052 | 7014.1.1.1 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA | 0.53 | 36.0 | 3.09e-01 | 70.4% | 94.3% |
| 4570115 | 2007.1.19.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › PLA2_B | 0.52 | 41.0 | 2.57e-01 | 91.4% | 54.4% |
| 5055893 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.51 | 42.0 | 2.83e-01 | 97.5% | 47.0% |
| 3820599 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.50 | 43.0 | 3.42e-01 | 100.0% | 85.6% |