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putative_nucleic_acid_binding_protein

Euk-Vir

Jasmine_virus_C

putative_nucleic_acid_binding_protein__YP_009275355__Jasmine_virus_C__1853762

Identity

Accession:: YP_009275355 ↗
Protein ID:: putative_nucleic_acid_binding_protein
Kingdom:: euk

Quality

75.4 mean pLDDT

Taxonomy

Orthornavirae› Kitrinoviricota› Alsuviricetes› Tymovirales› Betaflexiviridae› Carlavirus› Jasmine_virus_C

TaxID: 1853762

Cluster

View cluster (30 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-32

PDB

Domain cluster: representative

CATH (20)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1w8iA00	3.40.50.1010	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease	0.86	76.0	4.77e-01	100.0%	20.8%
3rcnA02	3.20.20.80	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases	0.81	59.0	3.33e-01	78.1%	7.4%
2o35A00	1.10.3340.10	Mainly Alpha › Orthogonal Bundle › SMc04008-like fold › SMc04008-like	0.78	63.0	4.88e-01	100.0%	53.2%
1ss3A00	1.10.287.720	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Pollen allergen ole e 6	0.78	58.0	5.40e-01	100.0%	70.0%
3u9rB02	3.90.226.10	Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1	0.76	62.0	3.71e-01	100.0%	12.5%
2ic6A00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.76	57.0	4.43e-01	84.4%	73.2%
1tfeA02	1.10.286.20	Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 ›	0.73	57.0	5.36e-01	100.0%	86.7%
2w43A02	1.10.150.240	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2	0.73	56.0	4.94e-01	100.0%	57.9%
16vpA00	1.10.1290.10	Mainly Alpha › Orthogonal Bundle › Conserved core of transcriptional regulatory protein vp16 › Alpha trans-inducing (Alpha-TIF)	0.72	60.0	3.45e-01	100.0%	10.9%
1ufhA00	3.40.630.30	Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT)	0.71	56.0	3.72e-01	100.0%	23.2%
4ezbA02	1.10.1040.10	Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	0.71	53.0	3.67e-01	84.4%	23.9%
1x42A02	1.10.150.240	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2	0.68	55.0	4.24e-01	100.0%	38.6%
5ts9B00	1.20.59.10	Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase	0.67	54.0	3.56e-01	100.0%	21.1%
2pjqA01	1.10.472.50	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like	0.64	49.0	3.82e-01	100.0%	36.0%
2ja2A04	1.10.8.70	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1	0.63	46.0	4.23e-01	93.8%	69.2%
2qs7A00	3.40.1260.10	Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Ychn; Chain: A, › DsrEFH-like	0.61	46.0	3.20e-01	96.9%	92.8%
2yfqB03	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.61	48.0	3.28e-01	100.0%	65.0%
2wzfA01	1.10.1740.130	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A ›	0.60	46.0	3.32e-01	90.6%	27.9%
3u62A01	3.40.50.10860	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1	0.60	45.0	3.21e-01	90.6%	24.8%
1e3oC02	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.58	49.0	4.32e-01	100.0%	64.6%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
9937	2006.1.4.2 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN	0.86	76.0	4.77e-01	100.0%	20.6%
4988046	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.75	62.0	5.50e-01	100.0%	64.0%
3250201	101.1.1.21 ↗	alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5	0.71	53.0	4.61e-01	100.0%	56.9%
5042877	103.5.1.0 ↗	alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like	0.70	58.0	5.14e-01	100.0%	74.0%
3702325	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.67	53.0	4.68e-01	100.0%	60.0%
5017114	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.63	51.0	3.30e-01	96.9%	20.6%

D2 medium residues 44-94

PDB

Domain cluster: rep: putative_nucleic_acid_binding_protein__YP_002574619__Helleborus_net_necrosis_virus__592206__D46-93

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01623.24 best	Carla_C4	71.7	6.80e-20	96.1%	51.6%