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putative_nucleocapsid_protein

Euk-Vir

Emaravirus_cajani

putative_nucleocapsid_protein__YP_009237281__Emaravirus_cajani__1980429

Identity

Accession:: YP_009237281 ↗
Protein ID:: putative_nucleocapsid_protein
Kingdom:: euk

Quality

71.1 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Bunyaviricetes› Elliovirales› Fimoviridae› Emaravirus› Emaravirus_cajani

TaxID: 1980429

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 156-281

PDB

Domain cluster: rep: putative_nucleocapsid_protein__YP_010088067__Emaravirus_cordylinae__2099567__D171-282

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF25629.2 best	Fimo_NCAP	184.9	2.80e-54	100.0%	46.6%

D2 medium residues 78-139

PDB

Domain cluster: rep: putative_nucleocapsid_protein__YP_010088067__Emaravirus_cordylinae__2099567__D59-133

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF25629.2 best	Fimo_NCAP	57.8	1.60e-15	100.0%	23.3%

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5m0nA00	1.10.630.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450	0.71	53.0	3.22e-01	82.3%	73.3%
4uhiA01	1.10.630.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450	0.69	52.0	3.13e-01	82.3%	77.8%
1cptA00	1.10.630.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450	0.64	46.0	2.86e-01	80.6%	75.2%
2rbkA02	3.30.1240.10	Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 ›	0.57	42.0	3.64e-01	80.6%	56.4%
3cskA03	3.30.70.2600	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.52	39.0	3.63e-01	79.0%	97.4%
4f7oA00	3.40.140.10	Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2	0.50	40.0	2.85e-01	95.2%	50.6%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5048373	2008.2.1.1 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo	0.62	42.0	3.57e-01	87.1%	41.9%
3933404	192.2.1.2 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin	0.62	42.0	3.20e-01	83.9%	29.3%
3670680	149.1.1.1 ↗	alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450	0.61	44.0	2.69e-01	77.4%	73.6%
4948773	2008.2.1.1 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo	0.60	40.0	3.00e-01	87.1%	26.0%
3630462	192.2.1.2 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin	0.59	40.0	3.13e-01	83.9%	32.1%
5042330	4203.1.1.0 ↗	few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like	0.57	47.0	4.54e-01	100.0%	82.9%
5059996	2008.2.1.1 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo	0.56	38.0	3.35e-01	87.1%	46.3%
5039168	2008.2.1.1 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo	0.54	36.0	3.21e-01	87.1%	45.3%
3216039	109.4.1.1945 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_Maestro, HEAT_Maestro_2, HEAT_MROH2B_1st, HEAT_MROH2B_C	0.53	40.0	2.17e-01	87.1%	5.2%
5045446	327.18.1.0 ↗	a+b two layers › Alpha-lytic protease prodomain-like › 40S ribosomal protein S7-A › 40S ribosomal protein S7-A	0.53	35.0	3.15e-01	71.0%	56.8%
4220776	4272.1.1.1 ↗	a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa	0.51	37.0	2.74e-01	79.0%	53.7%