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putative_nucleocapsid_protein

Euk-Vir

Emaravirus_cordylinae

putative_nucleocapsid_protein__YP_010088067__Emaravirus_cordylinae__2099567

Identity

Accession:
YP_010088067 ↗
Protein ID:
putative_nucleocapsid_protein
Kingdom:
euk

Quality

68.9 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Bunyaviricetes› Elliovirales› Fimoviridae› Emaravirus› Emaravirus_cordylinae

TaxID: 2099567

Cluster

View cluster (71 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 171-282
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25629.2 best Fimo_NCAP 146.8 1.20e-42 100.0% 44.0%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3zlaA02 1.10.472.180 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Bunyavirus nucleocapsid (N) protein, C-terminal domain 0.74 54.0 5.68e-01 82.1% 83.3%
2x0qA04 1.10.510.40 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › 0.57 44.0 3.69e-01 82.1% 98.4%
D2 medium residues 59-133
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25629.2 best Fimo_NCAP 72.6 4.90e-20 100.0% 26.7%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4qmfB01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.64 35.0 3.40e-01 94.7% 48.8%
2pw4A00 1.10.3300.10 Mainly Alpha › Orthogonal Bundle › Jann2411-like fold › Jann2411-like domain 0.54 38.0 2.96e-01 74.7% 71.6%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.54 39.0 3.85e-01 78.7% 88.7%
4nhxA02 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.53 40.0 2.96e-01 86.7% 94.9%
6ictA01 3.90.1410.10 Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 1 › set domain protein methyltransferase, domain 1 0.52 40.0 2.66e-01 81.3% 61.3%
3mr0A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 41.0 3.69e-01 88.0% 88.2%
1a73A00 3.90.75.10 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › Homing Intron 3 (I-ppo) Encoded Endonuclease; Chain A 0.50 37.0 2.99e-01 82.7% 50.6%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3238753 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.63 38.0 2.89e-01 73.3% 25.7%
3991902 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.62 38.0 3.35e-01 74.7% 41.8%
3817420 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.60 38.0 2.91e-01 77.3% 26.9%
3515407 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.60 38.0 2.96e-01 77.3% 29.2%
5039710 2011.1.1.6 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M20 0.55 41.0 2.80e-01 80.0% 96.5%
3459532 263.1.1.1 ↗ a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.55 35.0 3.58e-01 70.7% 67.1%
5050614 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.55 39.0 3.58e-01 78.7% 63.6%
3968506 3859.1.1.0 ↗ alpha arrays › uncharacterized protein BT_1490 C-terminal domain › uncharacterized protein BT_1490 C-terminal domain › uncharacterized protein BT_1490 C-terminal domain 0.55 40.0 3.62e-01 78.7% 89.5%
3290160 4.1.1.323 ↗ beta barrels › SH3 › SH3 › SH3 › WYL 0.55 39.0 3.89e-01 77.3% 86.3%
5048057 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.53 44.0 3.83e-01 94.7% 67.5%
5012155 4221.1.1.0 ↗ a+b two layers › YkuJ-like › YkuJ-like › YkuJ-like 0.52 39.0 3.99e-01 81.3% 97.3%
3258384 7529.1.1.3 ↗ a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Peptidase_M17_N 0.52 40.0 3.20e-01 85.3% 89.4%
4943044 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.52 42.0 3.84e-01 96.0% 88.2%
3292448 4964.1.1.2 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol 0.51 41.0 3.11e-01 96.0% 33.7%
4127413 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.51 30.0 2.72e-01 77.3% 39.0%
4340675 3186.1.1.1 ↗ a+b two layers › C-terminal domain of FliK › C-terminal domain of FliK › C-terminal domain of FliK › Flg_hook 0.51 38.0 3.64e-01 81.3% 90.0%
4949022 2003.1.2.7 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2 0.51 37.0 2.48e-01 80.0% 60.2%
3491256 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.51 37.0 2.91e-01 80.0% 45.1%
3213954 4964.1.1.2 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol 0.50 40.0 3.14e-01 93.3% 44.2%
4937663 2008.2.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.50 30.0 2.79e-01 74.7% 42.3%