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putative_nucleoprotein

Euk-Vir

Tacheng_Tick_Virus_5

putative_nucleoprotein__YP_009177718__Tacheng_Tick_Virus_5__1608087

Identity

Accession:: YP_009177718 ↗
Protein ID:: putative_nucleoprotein
Kingdom:: euk

Quality

83.6 mean pLDDT

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 52-201

PDB

Domain cluster: rep: putative_nucleoprotein__YP_009177706__Changping_Tick_Virus_2__1608044__D73-225

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5tgtA02	1.10.10.350	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.57	33.0	3.57e-01	94.0%	65.9%
1orjD00	1.20.120.340	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS	0.54	34.0	3.75e-01	88.7%	76.0%
4m0mA03	1.20.1270.430	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.54	29.0	3.86e-01	96.7%	98.7%
2pbiA02	1.10.1240.60	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 ›	0.52	26.0	3.12e-01	74.7%	70.3%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4983262	1074.1.1.1 ↗	alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_lgN	0.61	32.0	4.00e-01	84.0%	82.1%
3284296	1111.1.1.1 ↗	alpha complex topology › Trimeric intracellular cation (TRIC) channel › Trimeric intracellular cation (TRIC) channel › Trimeric intracellular cation (TRIC) channel › Gly_transporter	0.52	43.0	3.90e-01	88.7%	89.5%
5073302	3930.1.1.3 ↗	alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase › RNA_helicase_helical	0.51	33.0	3.43e-01	76.7%	67.9%

D2 high residues 205-292

PDB

Domain cluster: rep: putative_nucleoprotein__YP_009666258__Wuchang_Cockroach_Virus_3__1608099__D177-270

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4b3hA03	1.10.1040.50	Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 ›	0.59	44.0	3.37e-01	79.5%	98.6%
2yw6B00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.58	52.0	4.37e-01	100.0%	87.3%
2clbA01	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.58	50.0	4.21e-01	100.0%	83.6%
1uujA00	1.20.960.30	Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A ›	0.55	34.0	3.57e-01	76.1%	68.4%
1bm9A00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.55	43.0	3.96e-01	86.4%	82.5%
2yjkC00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.55	47.0	4.01e-01	100.0%	83.4%
2p3yA02	1.10.3360.10	Mainly Alpha › Orthogonal Bundle › VPA0735-like fold › VPA0735-like domain	0.55	37.0	3.53e-01	70.5%	100.0%
2hxiB02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.53	40.0	3.53e-01	80.7%	89.6%
1np7A02	1.25.40.80	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.53	37.0	3.41e-01	98.9%	54.6%
8amzP01	1.25.40.570	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.51	44.0	2.93e-01	100.0%	22.9%
3i9v104	1.20.1440.230	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain	0.50	38.0	3.70e-01	83.0%	74.8%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3690869	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.65	50.0	4.93e-01	87.5%	75.8%
3884427	103.11.1.1 ↗	alpha arrays › RuvA-C › RMI1 N-terminal helical domain-related › RMI1 N-terminal helical domain-related › RMI1_N_N	0.63	32.0	3.63e-01	87.5%	63.1%
4946290	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.63	43.0	4.85e-01	98.9%	96.9%
3297319	611.3.1.1 ↗	alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Med26	0.60	36.0	3.58e-01	100.0%	55.8%
4420072	601.7.1.35 ↗	alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › UFL1_C	0.59	34.0	3.11e-01	78.4%	42.6%
3264670	601.7.1.35 ↗	alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › UFL1_C	0.59	36.0	3.35e-01	78.4%	47.4%
4625648	101.1.2.48 ↗	alpha arrays › HTH › HTH › winged helix domain › PadR	0.59	46.0	4.38e-01	87.5%	88.1%
3587826	101.1.2.48 ↗	alpha arrays › HTH › HTH › winged helix domain › PadR	0.58	46.0	4.32e-01	87.5%	88.9%
3211309	5050.1.1.4 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Nucleoside_tran	0.57	43.0	3.43e-01	79.5%	88.3%
3235055	3065.1.1.2 ↗	alpha bundles › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › Gp-FAR-1	0.56	45.0	3.79e-01	87.5%	87.1%
4470601	601.7.1.35 ↗	alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › UFL1_C	0.56	34.0	2.97e-01	78.4%	40.0%
3350068	633.22.1.1 ↗	alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR) › VKOR	0.52	40.0	3.34e-01	84.1%	70.3%
3250971	616.1.1.0 ↗	alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain	0.51	42.0	4.10e-01	93.2%	89.0%

D3 high residues 297-425

PDB

Domain cluster: rep: ORF4__YP_009254003__Lonestar_tick_chuvirus_1__1844927__D3-107