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putative_nucleoprotein
Euk-VirWuhan_tick_virus_2
putative_nucleoprotein__YP_009177724__Wuhan_tick_virus_2__1608138
Identity
- Accession:
- YP_009177724 ↗
- Protein ID:
- putative_nucleoprotein
- Kingdom:
- euk
Quality
75.3
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Monjiviricetes›
Jingchuvirales›
Chuviridae›
Mivirus›
Wuhan_tick_virus_2
TaxID: 1608138
Cluster
View cluster (9 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 276-402
Domain cluster:
rep: ORF4__YP_009254003__Lonestar_tick_chuvirus_1__1844927__D3-107
D2
medium
residues 4-36_188-275
D3
medium
residues 37-187
Domain cluster:
rep: putative_nucleoprotein__YP_009177706__Changping_Tick_Virus_2__1608044__D73-225
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4h8aB01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.55 | 23.0 | 3.43e-01 | 74.2% | 95.0% |
| 3cxbA03 | 1.10.1740.30 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain | 0.53 | 26.0 | 3.28e-01 | 96.0% | 80.2% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.52 | 25.0 | 3.22e-01 | 97.4% | 78.4% |
| 2pbiA02 | 1.10.1240.60 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.50 | 26.0 | 3.16e-01 | 73.5% | 74.3% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3996790 | 103.4.1.6 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › EloA-BP1 | 0.52 | 24.0 | 3.27e-01 | 74.2% | 85.3% |
| 4936234 | 3542.1.1.2 ↗ | alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › SPP | 0.52 | 40.0 | 3.55e-01 | 81.5% | 79.1% |