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putative_nucleoprotein
Euk-VirShahe_heteroptera_virus_3
putative_nucleoprotein__YP_009329877__Shahe_heteroptera_virus_3__1923419
Identity
- Accession:
- YP_009329877 ↗
- Protein ID:
- putative_nucleoprotein
- Kingdom:
- euk
Quality
85.9
mean pLDDT
Cluster
View cluster (83 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 16-142
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05733.17 best | Tenui_N | 43.1 | 5.30e-11 | 93.7% | 40.6% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1oisA01 | 1.10.10.41 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Yeast DNA topoisomerase - domain 1 | 0.54 | 36.0 | 4.06e-01 | 93.7% | 93.5% |
| 2zopA00 | 1.10.520.30 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain | 0.53 | 38.0 | 4.03e-01 | 74.0% | 95.5% |
| 1y0uA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 32.0 | 3.67e-01 | 96.1% | 86.5% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1007268 | 3143.1.2.1 ↗ | alpha complex topology › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein › Tenui_N | 0.88 | 67.0 | 5.16e-01 | 81.9% | 39.9% |
| 1030601 | 3143.1.2.1 ↗ | alpha complex topology › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein › Tenui_N | 0.87 | 66.0 | 5.05e-01 | 78.7% | 39.0% |
| 3820015 | 3143.1.2.1 ↗ | alpha complex topology › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein › Tenui_N | 0.75 | 68.0 | 5.25e-01 | 96.1% | 46.9% |
| 3283604 | 101.1.3.4 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 | 0.64 | 43.0 | 4.74e-01 | 79.5% | 87.0% |
| 4449595 | 2004.1.1.455 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, UvrD_C, UvrD_C_2 | 0.61 | 45.0 | 2.85e-01 | 77.2% | 73.1% |
| 3964423 | 2004.1.1.455 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, UvrD_C, UvrD_C_2 | 0.59 | 44.0 | 2.82e-01 | 78.0% | 77.0% |
| 4247735 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.51 | 40.0 | 2.46e-01 | 82.7% | 49.7% |
| 4296126 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.51 | 39.0 | 2.63e-01 | 81.9% | 76.0% |
| 4998970 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.50 | 38.0 | 3.53e-01 | 81.9% | 98.2% |
D2
high
residues 151-263
Domain cluster:
rep: nucleocapsid__YP_009664617__Cumuto_virus__1457166__D148-265