putative_nucleoprotein

Euk-Vir

Hubei_diptera_virus_10

putative_nucleoprotein__YP_009337290__Hubei_diptera_virus_10__1922871

Identity

87.2 mean pLDDT

View cluster (144 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 233-348

PDB

Domain cluster: rep: nucleocapsid_protein__YP_009094263__Grass_carp_virus__1288359__D228-303

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00945.24 best	Rhabdo_ncap	80.2	2.10e-22	100.0%	27.3%

D2 medium residues 37-59_131-229

PDB

Domain cluster: rep: nucleocapsid_protein__YP_009094340__Scophthalmus_maximus_rhabdovirus__936149__D129-226_273-284

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00945.24 best	Rhabdo_ncap	72.9	3.40e-20	92.6%	24.4%

D3 medium residues 60-130

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3hhwK01	1.10.3570.10	Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like fold › Rhabdovirus nucleocapsid protein like domain	0.85	79.0	5.69e-01	100.0%	39.3%
2j6lA02	3.40.309.10	Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 2 › Aldehyde Dehydrogenase; Chain A, domain 2	0.53	37.0	2.80e-01	73.2%	64.8%
3bjoA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.53	37.0	3.33e-01	73.2%	89.3%
4lxjA01	1.10.630.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450	0.51	44.0	2.82e-01	100.0%	42.0%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2966640	566.2.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap	0.86	79.0	4.82e-01	100.0%	17.7%
4846751	566.2.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap	0.85	77.0	5.01e-01	100.0%	25.4%
2992377	566.2.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap	0.83	76.0	4.72e-01	100.0%	19.5%
3960477	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.53	25.0	2.69e-01	74.6%	47.7%
4572737	149.1.1.1 ↗	alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450	0.53	45.0	3.15e-01	100.0%	67.4%

D4 medium residues 410-463

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4nphA02	1.20.1270.330	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.52	35.0	3.32e-01	74.1%	98.6%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2966640	566.2.1.1 ↗	alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap	0.86	77.0	4.49e-01	100.0%	13.2%