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putative_nucleoprotein

Euk-Vir

Xingshan_nematode_virus_4

putative_nucleoprotein__YP_009344974__Xingshan_nematode_virus_4__1923763

Identity

Accession:
YP_009344974 ↗
Protein ID:
putative_nucleoprotein
Kingdom:
euk

Quality

76.3 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Alphanemrhavirus› Xingshan_nematode_virus_4

TaxID: 1923763

Cluster

View cluster (34 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 42-220
PDB
Domain cluster: rep: nucleoprotein__YP_010084457__Lepeophtheirus_salmonis_rhabdovirus_127__1573761__D41-226
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00945.24 best Rhabdo_ncap 91.4 8.30e-26 98.3% 39.0%
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gttC01 1.10.3570.10 Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like fold › Rhabdovirus nucleocapsid protein like domain 0.88 85.0 8.26e-01 100.0% 96.9%
3hhwK01 1.10.3570.10 Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like fold › Rhabdovirus nucleocapsid protein like domain 0.86 82.0 8.17e-01 100.0% 97.8%
4j8sA00 1.25.40.840 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › CCR4-NOT transcription complex subunit 1 TTP binding domain 0.51 37.0 3.75e-01 100.0% 73.3%
2damA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.51 19.0 2.87e-01 99.4% 80.6%
6jlzA01 1.20.120.1070 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Translation initiation factor eIF-2B, N-terminal domain 0.50 23.0 2.87e-01 82.7% 66.7%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4846751 566.2.1.1 ↗ alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap 0.89 86.0 7.24e-01 100.0% 68.1%
2992377 566.2.1.1 ↗ alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap 0.89 86.0 6.52e-01 100.0% 50.9%
2966640 566.2.1.1 ↗ alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap 0.87 83.0 6.18e-01 100.0% 44.5%
4947265 4009.1.1.0 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.68 24.0 3.86e-01 75.4% 82.9%
4960785 4009.1.1.0 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.66 24.0 3.76e-01 75.4% 82.9%
5077807 4009.1.1.0 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.64 24.0 3.78e-01 76.0% 87.1%
4975294 601.28.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like 0.56 26.0 3.61e-01 84.9% 86.7%
3616706 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.50 22.0 2.54e-01 88.8% 50.4%
3927684 5057.1.1.0 ↗ alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore 0.50 25.0 2.70e-01 93.9% 53.5%
D2 medium residues 226-320
PDB
Domain cluster: rep: nucleocapsid__YP_009302014__Wuhan_Louse_Fly_Virus_10__1608114__D226-319_345-374
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00945.24 best Rhabdo_ncap 51.1 1.40e-13 100.0% 22.2%
D3 medium residues 321-433
PDB
Domain cluster: rep: putative_nucleoprotein__YP_009344985__Xinzhou_nematode_virus_4__1923772__D335-436