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putative_nucleoprotein
Euk-VirXinzhou_nematode_virus_4
putative_nucleoprotein__YP_009344985__Xinzhou_nematode_virus_4__1923772
Identity
- Accession:
- YP_009344985 ↗
- Protein ID:
- putative_nucleoprotein
- Kingdom:
- euk
Quality
82.1
mean pLDDT
Cluster
View cluster (34 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 44-232
Domain cluster:
rep: nucleoprotein__YP_010084457__Lepeophtheirus_salmonis_rhabdovirus_127__1573761__D41-226
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00945.24 best | Rhabdo_ncap | 74.4 | 1.20e-20 | 99.5% | 43.2% |
D2
medium
residues 234-334
Domain cluster:
rep: nucleocapsid__YP_009302014__Wuhan_Louse_Fly_Virus_10__1608114__D226-319_345-374
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00945.24 best | Rhabdo_ncap | 65.2 | 7.70e-18 | 100.0% | 23.9% |
D3
medium
residues 335-436
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gttJ02 | 1.10.3610.10 | Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein | 0.69 | 58.0 | 4.64e-01 | 100.0% | 47.9% |
| 2gicD02 | 1.10.3610.10 | Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein | 0.63 | 58.0 | 4.64e-01 | 100.0% | 62.1% |
| 2m6uA00 | 1.20.81.20 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › | 0.51 | 33.0 | 3.62e-01 | 70.6% | 84.1% |