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putative_nucleoprotein

Euk-Vir

Bolahun_virus_variant_2

putative_nucleoprotein__YP_010084241__Bolahun_virus_variant_2__1903560

Identity

Accession:
YP_010084241 ↗
Protein ID:
putative_nucleoprotein
Kingdom:
euk

Quality

65.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 98-288
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gdxA02 1.10.246.130 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain 0.54 28.0 3.54e-01 95.3% 83.8%
1irxA05 1.10.10.350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.51 25.0 3.48e-01 76.4% 96.8%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4034224 632.19.1.3 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 0.56 22.0 3.37e-01 78.0% 89.3%
D2 high residues 294-428
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1n93X02 1.10.3050.10 Mainly Alpha › Orthogonal Bundle › borna disease virus nucleoprotein, domain 2 › borna disease virus nucleoprotein, domain 2 0.74 56.0 5.80e-01 82.2% 82.7%
2gicD02 1.10.3610.10 Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein 0.70 53.0 4.65e-01 79.3% 76.9%
2gttJ02 1.10.3610.10 Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein 0.62 51.0 4.60e-01 89.6% 76.8%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3915087 566.1.1.0 ↗ alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related 0.76 55.0 4.07e-01 74.8% 31.2%
2749214 566.1.1.1 ↗ alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Paramyxo_ncap 0.73 57.0 4.07e-01 82.2% 29.6%
2996711 566.1.1.1 ↗ alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Paramyxo_ncap 0.73 57.0 4.02e-01 82.2% 28.5%
2756727 566.1.1.1 ↗ alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Paramyxo_ncap 0.73 57.0 4.06e-01 83.0% 29.4%
2769765 566.1.1.1 ↗ alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Paramyxo_ncap 0.72 56.0 3.98e-01 82.2% 29.4%
3661217 109.4.1.1334 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3, PPR_long 0.56 31.0 2.88e-01 100.0% 41.2%
D3 medium residues 16-96
PDB