putative_poly-A-_polymerase_large_subunit

Euk-Vir

Anomala_cuprea_entomopoxvirus

putative_poly-A-_polymerase_large_subunit__YP_009001619__Anomala_cuprea_entomopoxvirus__62099

Identity

80.3 mean pLDDT

View cluster (34 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-107

PDB

Domain cluster: rep: poly-A-_polymerase_catalytic_subunit_VP55__YP_008003861__Adoxophyes_honmai_entomopoxvirus_L__1293540__D11-107

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF12630.14 best	Pox_polyA_pol_N	85.5	4.50e-24	93.9%	79.6%

D2 high residues 339-519

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF12629.14 best	Pox_polyA_pol_C	83.7	2.50e-23	99.5%	61.1%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1j5wA02	1.20.58.180	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2	0.56	23.0	3.60e-01	83.4%	93.5%
1a7eA00	1.20.120.50	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like	0.53	28.0	3.43e-01	86.7%	77.1%
3ed5A02	1.10.150.240	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2	0.53	23.0	3.30e-01	90.1%	86.9%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4269685	192.11.1.1 ↗	alpha bundles › Long alpha-hairpin › C-terminal UvrC-binding domain of UvrB › C-terminal UvrC-binding domain of UvrB › UVR	0.71	23.0	4.11e-01	86.7%	87.3%
3999931	192.17.1.1 ↗	alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like › Rbsn	0.69	26.0	4.44e-01	83.4%	98.5%
1545617	316.1.1.33 ↗	a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › APMV_polyA_pol_cat_2nd	0.55	51.0	4.29e-01	99.4%	68.2%
3283408	211.1.1.1 ↗	a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase	0.55	32.0	3.99e-01	88.4%	92.1%

D3 medium residues 120-150_289-338

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF12629.14 best	Pox_polyA_pol_C	40.7	3.70e-10	71.6%	25.2%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2c9oB03	1.10.8.60	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.60	36.0	3.64e-01	86.4%	57.8%
3dfzA02	1.10.8.610	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › SirC, precorrin-2 dehydrogenase, C-terminal helical domain-like	0.58	33.0	3.51e-01	81.5%	62.2%
1uouA01	1.20.970.10	Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C	0.55	30.0	3.20e-01	81.5%	60.3%
3u4qA02	1.10.274.50	Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 ›	0.54	44.0	3.61e-01	88.9%	77.3%
2x1dA02	1.10.10.2120	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.52	36.0	3.70e-01	72.8%	83.8%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3589888	4275.1.1.0 ↗	alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like	0.61	36.0	3.52e-01	77.8%	53.3%
5052820	223.2.1.0 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like	0.55	41.0	3.14e-01	79.0%	98.4%
4024287	5001.1.1.81 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › THH1_TOM1-3_dom	0.55	44.0	3.08e-01	91.4%	55.2%
3191826	5058.1.1.0 ↗	alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region	0.54	38.0	3.75e-01	72.8%	70.6%

D4 medium residues 170-288_522-567

PDB

Domain cluster: rep: putative_polyA_polymerase_catalytic_subunit__YP_009173345__Chrysochromulina_ericina_virus__455364__D206-387

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03296.21 best	Pox_polyA_pol	157.1	3.90e-46	67.3%	74.3%