putative_primase

Euk-Vir

Brazilian_marseillevirus

putative_primase__YP_009238702__Brazilian_marseillevirus__1813599

Identity

81.2 mean pLDDT

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Marseilleviridae› Marseillevirus› Brazilian_marseillevirus

TaxID: 1813599

View cluster (27 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 288-377

PDB

Domain cluster: rep: putative_primase__YP_009506829__Tunisvirus_fontaine2__1421067__D281-379

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF08707.17 best	PriCT_2	67.4	1.60e-18	83.3%	97.4%

D2 high residues 380-518

PDB

Domain cluster: rep: VV_D5-like_helicase__YP_009000916__Pithovirus_sibericum__1450746__D372-558

D3 high residues 807-891

PDB

Domain cluster: rep: D5_family_NTPase_ATPase__YP_010084866__Shrimp_hemocyte_iridescent_virus__2039780__D809-878

D4 medium residues 14-69_192-212_229-266

PDB

Domain cluster: rep: putative_D5-ATPase-helicase__YP_009052397__Aureococcus_anophagefferens_virus__1474867__D1-67_179-194_228-243

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF23162.2 best	AEP_C962R	33.1	9.00e-08	40.9%	23.8%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2l6oA01	2.40.10.320	Mainly Beta › Beta Barrel › Thrombin, subunit H › Uncharacterised protein PF13642 yp_926445, N-terminal domain	0.58	30.0	3.65e-01	81.7%	77.8%
1fviA01	3.30.1490.70	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 ›	0.54	27.0	3.08e-01	93.9%	63.3%
5hkxA04	3.30.40.10	Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger)	0.51	21.0	3.19e-01	90.4%	93.2%
4gipD03	2.60.40.1690	Mainly Beta › Sandwich › Immunoglobulin-like › Head and neck region of the ectodomain of NDV fusion glycoprotein	0.51	23.0	3.02e-01	75.7%	78.9%
4msxA01	3.30.40.10	Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger)	0.50	28.0	3.02e-01	87.8%	63.4%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3228862	103.1.1.0 ↗	alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain	0.59	22.0	2.84e-01	71.3%	55.7%
3718844	7.1.1.4 ↗	beta barrels › PDZ domain › PDZ domain › PDZ domain › GRASP55_65	0.58	37.0	3.87e-01	85.2%	67.9%
3824943	904.1.1.0 ↗	few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain	0.57	32.0	3.74e-01	89.6%	78.8%
3357277	904.1.1.1 ↗	few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box	0.56	32.0	3.72e-01	89.6%	80.0%
3882034	904.1.1.22 ↗	few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box, TRIM_CC	0.54	22.0	1.91e-01	73.0%	22.2%
3464315	904.1.1.0 ↗	few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain	0.53	33.0	3.88e-01	90.4%	94.8%

D5 medium residues 70-191_213-228

PDB

Domain cluster: rep: primase__YP_009345453__Noumeavirus__1955558__D12-194

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF23162.2 best	AEP_C962R	109.8	2.60e-31	94.2%	62.7%

D6 medium residues 564-605_734-806

PDB

Domain cluster: rep: putative_D5-ATPase-helicase__YP_009052397__Aureococcus_anophagefferens_virus__1474867__D587-621_752-814

D7 medium residues 606-665_678-733

PDB

Domain cluster: rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764