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putative_primase

Euk-Vir

Tunisvirus_fontaine2

putative_primase__YP_009506829__Tunisvirus_fontaine2__1421067

Identity

Accession:: YP_009506829 ↗
Protein ID:: putative_primase
Kingdom:: euk

Quality

79.2 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Marseilleviridae› Losannavirus› Tunisvirus_fontaine2

TaxID: 1421067

Cluster

View cluster (27 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 806-891

PDB

Domain cluster: rep: D5_family_NTPase_ATPase__YP_010084866__Shrimp_hemocyte_iridescent_virus__2039780__D809-878

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1p6rA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.65	46.0	4.75e-01	97.7%	78.0%
4esjA02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.64	49.0	4.92e-01	97.7%	80.0%
3dplC03	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.64	47.0	4.79e-01	94.2%	80.7%
4etsA01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.61	44.0	4.40e-01	97.7%	74.7%
1u5tB01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.59	52.0	5.30e-01	97.7%	98.8%
2q5wD00	3.10.20.30	Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain	0.56	39.0	4.13e-01	98.8%	80.5%
1vw4L02	1.10.246.170	Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 ›	0.53	38.0	3.82e-01	95.3%	76.5%
1iv8A04	1.10.10.470	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Maltooligosyl trehalose synthase; domain 4	0.52	42.0	4.06e-01	96.5%	77.3%
5z4zC00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.51	35.0	3.54e-01	98.8%	70.5%
3b5iA02	1.10.1200.220	Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A ›	0.50	39.0	3.77e-01	83.7%	92.6%

ECOD (27)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3249045	101.1.15.0 ↗	alpha arrays › HTH › HTH › HAT1, C-terminal domain	0.71	60.0	5.13e-01	98.8%	59.2%
4967393	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.71	52.0	5.64e-01	97.7%	95.7%
3702395	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.69	59.0	5.78e-01	97.7%	85.3%
4991793	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.69	51.0	3.79e-01	97.7%	30.2%
5073218	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.67	51.0	5.04e-01	97.7%	76.7%
2523328	101.1.2.94 ↗	alpha arrays › HTH › HTH › winged helix domain › ANAPC2	0.67	52.0	5.17e-01	97.7%	80.0%
3168448	101.1.2.154 ↗	alpha arrays › HTH › HTH › winged helix domain › CDT1_C	0.67	54.0	4.66e-01	96.5%	57.4%
3260089	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.66	39.0	4.41e-01	84.9%	81.7%
5046136	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.66	59.0	4.97e-01	97.7%	64.3%
4022514	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.66	60.0	5.51e-01	100.0%	79.1%
4981204	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.65	58.0	5.78e-01	97.7%	98.9%
3731177	7575.1.1.0 ↗	a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like	0.64	47.0	3.44e-01	97.7%	29.3%
3602723	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.63	57.0	5.13e-01	97.7%	80.0%
3505211	101.1.2.101 ↗	alpha arrays › HTH › HTH › winged helix domain › Cdc6_C	0.62	56.0	4.80e-01	100.0%	92.8%
3617345	101.1.2.151 ↗	alpha arrays › HTH › HTH › winged helix domain › COR	0.62	53.0	5.10e-01	97.7%	81.0%
3857980	101.1.2.309 ↗	alpha arrays › HTH › HTH › winged helix domain › GPAT_C	0.62	55.0	5.07e-01	97.7%	82.6%
3914234	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.62	54.0	5.08e-01	97.7%	87.6%
3592662	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.61	52.0	5.24e-01	96.5%	100.0%
3785110	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.61	52.0	4.57e-01	97.7%	74.8%
4126653	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.60	53.0	5.10e-01	98.8%	98.0%
3615532	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.60	47.0	4.89e-01	97.7%	91.3%
3224751	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.60	53.0	5.15e-01	97.7%	94.7%
3554191	101.1.2.309 ↗	alpha arrays › HTH › HTH › winged helix domain › GPAT_C	0.59	53.0	3.63e-01	100.0%	67.4%
3716735	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.55	48.0	4.42e-01	100.0%	89.6%
4033902	4146.1.1.1 ↗	alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like › YqgQ-like	0.54	35.0	4.05e-01	70.9%	93.3%
3205322	4230.1.1.7 ↗	alpha arrays › DnaD domain › DnaD domain › DnaD domain › Y_phosphatase	0.54	39.0	4.26e-01	86.0%	95.7%
4565836	4146.1.1.1 ↗	alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like › YqgQ-like	0.52	34.0	3.69e-01	89.5%	82.9%

D2 medium residues 1-68_191-205

PDB

D3 medium residues 69-190_206-280

PDB

D4 medium residues 281-379

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF08707.17 best	PriCT_2	66.6	2.90e-18	75.8%	97.4%

CATH (14)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2c12A01	1.10.540.10	Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain	0.61	42.0	3.95e-01	72.7%	92.9%
5iduA01	1.10.540.10	Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain	0.60	43.0	4.11e-01	75.8%	91.7%
3ddeB00	1.20.910.10	Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like	0.59	50.0	3.90e-01	96.0%	92.2%
2lwxA00	1.10.8.840	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ribosome-associated complex head domain	0.58	35.0	3.67e-01	97.0%	64.8%
2ix5A01	1.10.540.10	Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain	0.58	42.0	3.84e-01	75.8%	82.1%
7wu8B01	1.20.1160.20	Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) ›	0.58	40.0	4.34e-01	72.7%	88.6%
3beeA00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.58	40.0	4.18e-01	75.8%	78.0%
1f7uA02	1.10.730.10	Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1	0.58	40.0	3.78e-01	72.7%	70.4%
2ooeA01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.57	43.0	3.55e-01	80.8%	61.1%
3m9vA01	1.10.540.10	Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain	0.57	41.0	3.88e-01	76.8%	92.9%
1j77A00	1.20.910.10	Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like	0.55	46.0	3.77e-01	96.0%	92.0%
2hraA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.54	37.0	3.88e-01	70.7%	85.7%
3fp3A01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.53	36.0	3.31e-01	80.8%	51.1%
8ex5A01	1.20.1250.20	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains	0.52	38.0	3.17e-01	78.8%	72.8%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4935112	182.1.3.3 ↗	alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX › DNA_primase_lrg	0.67	53.0	5.01e-01	85.9%	97.5%
5045965	182.1.3.3 ↗	alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX › DNA_primase_lrg	0.61	47.0	4.74e-01	81.8%	96.0%
5043574	182.1.3.3 ↗	alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX › DNA_primase_lrg	0.60	53.0	4.90e-01	97.0%	80.8%
4494836	182.1.3.3 ↗	alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX › DNA_primase_lrg	0.60	53.0	4.84e-01	98.0%	79.2%
3168252	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.58	43.0	3.70e-01	79.8%	48.2%
4990335	182.1.3.3 ↗	alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX › DNA_primase_lrg	0.57	50.0	4.77e-01	99.0%	87.8%
4570966	4016.1.1.0 ↗	alpha bundles › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase	0.57	39.0	3.49e-01	72.7%	58.0%
1693760	4033.1.1.1 ↗	alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA_dh_N	0.57	41.0	3.79e-01	76.8%	90.8%
3686313	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.56	43.0	3.27e-01	85.9%	53.6%
4203273	5050.1.1.0 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter	0.52	43.0	3.37e-01	90.9%	73.0%
4927596	604.5.1.0 ↗	alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895)	0.52	42.0	3.84e-01	87.9%	84.6%
5000823	102.1.1.0 ↗	alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like	0.51	36.0	3.33e-01	82.8%	56.9%
4506757	3922.1.1.129 ↗	alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › SMC_N	0.50	38.0	2.54e-01	82.8%	92.9%

D5 medium residues 380-515

PDB

Domain cluster: rep: VV_D5-like_helicase__YP_009000916__Pithovirus_sibericum__1450746__D372-558

D6 medium residues 516-573

PDB

Domain cluster: rep: primase_D5__YP_009329716__BeAn_58058_virus__67082__D404-464

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF08706.17 best	D5_N	35.4	1.70e-08	100.0%	29.2%

D7 medium residues 574-597_728-801

PDB

Domain cluster: rep: putative_D5-ATPase-helicase__YP_009052397__Aureococcus_anophagefferens_virus__1474867__D587-621_752-814

D8 medium residues 598-727

PDB

Domain cluster: rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF19263.6 best	DUF5906	32.7	1.50e-07	91.5%	95.6%