←Back to structures
putative_prophage_protein
Euk-VirMelbournevirus
putative_prophage_protein__YP_009094723__Melbournevirus__1560514
Identity
- Accession:
- YP_009094723 ↗
- Protein ID:
- putative_prophage_protein
- Kingdom:
- euk
Quality
71.4
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Pimascovirales›
Marseilleviridae›
Marseillevirus›
Marseillevirus_sp._'Melbournevirus'
TaxID: 1560514
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 90-165
Domain cluster:
rep: IMGVR_UViG_3300028601_000785-3300028601-Ga0265295_100223635__D1-73
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1tj7A02 | 1.20.200.10 | Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) | 0.63 | 41.0 | 2.74e-01 | 88.2% | 17.9% |
| 8eb0A01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.62 | 47.0 | 4.52e-01 | 80.3% | 100.0% |
| 1wimA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.59 | 48.0 | 4.50e-01 | 86.8% | 95.7% |
| 5lnkA00 | 1.20.58.1610 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 | 0.59 | 33.0 | 2.90e-01 | 73.7% | 36.5% |
| 7dvrA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 40.0 | 3.26e-01 | 76.3% | 66.0% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3494950 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.75 | 56.0 | 5.57e-01 | 81.6% | 75.0% |
| 3790267 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.72 | 52.0 | 5.27e-01 | 80.3% | 77.3% |
| 3926338 | 376.1.1.94 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_IRF-2BP1_2 | 0.61 | 44.0 | 4.12e-01 | 76.3% | 100.0% |
| 4942722 | 377.1.1.6 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e | 0.56 | 38.0 | 3.79e-01 | 71.1% | 91.3% |
| 3361724 | 377.1.1.6 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e | 0.52 | 44.0 | 4.24e-01 | 98.7% | 96.7% |
| 3249194 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 42.0 | 3.19e-01 | 94.7% | 78.0% |
| 3174062 | 7022.1.1.1 ↗ | alpha bundles › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › MBOAT | 0.51 | 37.0 | 2.72e-01 | 77.6% | 27.9% |
| 3227443 | 375.10.1.2 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE | 0.50 | 33.0 | 3.54e-01 | 77.6% | 78.1% |
D2
medium
residues 3-80
Domain cluster:
rep: putative_prophage_protein__YP_009506922__Tunisvirus_fontaine2__1421067__D1-61