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putative_protease

Euk-Vir

Beihai_astro-like_virus

putative_protease__YP_009333211__Beihai_astro-like_virus__1922353

Identity

Accession:
YP_009333211 ↗
Protein ID:
putative_protease
Kingdom:
euk

Quality

50.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 372-425_504-592
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wczA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.75 55.0 6.17e-01 96.5% 93.9%
1zyoA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.73 50.0 5.89e-01 94.4% 100.0%
1p3cA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.71 50.0 5.81e-01 90.2% 98.1%
3l6pA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.69 48.0 5.57e-01 84.6% 98.1%
3otpA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.64 57.0 5.01e-01 94.4% 97.5%
1agjA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 53.0 5.49e-01 90.9% 94.8%
4ri0A01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.62 55.0 4.88e-01 93.7% 98.5%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.58 29.0 3.79e-01 76.2% 86.1%
3bbaA00 3.90.70.50 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) 0.58 42.0 3.51e-01 75.5% 90.2%
2gpjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 30.0 3.57e-01 78.3% 74.0%
2gk6A02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.57 29.0 3.74e-01 76.2% 85.5%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3448847 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.84 59.0 4.63e-01 71.3% 100.0%
3280955 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.83 58.0 4.91e-01 71.3% 96.4%
4028981 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.81 57.0 4.88e-01 72.0% 97.7%
134018 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.81 58.0 5.53e-01 72.7% 100.0%
3443107 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.79 60.0 5.09e-01 78.3% 95.1%
5072499 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.78 56.0 4.96e-01 74.1% 99.5%
3447771 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.77 54.0 4.51e-01 72.0% 98.3%
3436414 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.65 59.0 5.13e-01 96.5% 98.6%
3443528 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.65 59.0 5.06e-01 96.5% 99.5%
3447254 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.65 59.0 5.06e-01 97.2% 97.3%
3432441 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.64 60.0 4.80e-01 98.6% 92.2%
3428386 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.64 57.0 4.70e-01 95.8% 83.6%
3462061 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.63 58.0 4.95e-01 96.5% 98.1%
None — 0.63 58.0 4.94e-01 96.5% 96.7%
3437290 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.63 57.0 4.88e-01 95.8% 99.5%
None — 0.62 57.0 4.92e-01 96.5% 96.7%
1096110 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.62 57.0 4.88e-01 96.5% 96.8%
3417330 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.62 56.0 4.85e-01 96.5% 97.7%
376155 1.1.17.2 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_C3 0.61 53.0 4.71e-01 90.9% 100.0%
3435448 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.61 54.0 4.45e-01 92.3% 99.2%
22087 1.1.5.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.59 56.0 4.58e-01 100.0% 98.4%
3377696 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.59 52.0 4.62e-01 93.0% 99.5%
3262549 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.59 52.0 4.38e-01 94.4% 96.5%
4881914 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.58 47.0 4.15e-01 85.3% 100.0%
4119987 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.57 49.0 4.17e-01 90.9% 97.3%
3291237 1.1.5.15 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › F420H2_quin_red 0.56 45.0 4.87e-01 88.1% 99.2%
3953207 1.1.5.15 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › F420H2_quin_red 0.56 39.0 4.46e-01 71.3% 100.0%
4931814 1.1.5.15 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › F420H2_quin_red 0.53 43.0 4.40e-01 85.3% 100.0%
3290435 1.1.5.15 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › F420H2_quin_red 0.52 44.0 4.19e-01 90.9% 97.1%
3960402 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.51 42.0 4.41e-01 85.3% 100.0%
3280574 1.1.5.15 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › F420H2_quin_red 0.51 44.0 4.45e-01 90.2% 97.1%
D2 medium residues 426-503
PDB
Domain cluster: rep: hypothetical_protein_1__YP_009329993__Hubei_sobemo-like_virus_6__1923239__D113-207
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2w5eA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.85 66.0 7.15e-01 89.7% 96.9%
2o8mB01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.78 60.0 6.44e-01 98.7% 95.5%
1lvmA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.78 68.0 6.14e-01 96.2% 74.5%
2z9iC01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.77 71.0 6.69e-01 100.0% 89.1%
8e7cA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.76 63.0 6.28e-01 88.5% 95.1%
1zyoA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.75 67.0 6.60e-01 98.7% 100.0%
2zu2A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.75 69.0 6.35e-01 100.0% 85.7%
2ynaA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.73 67.0 6.42e-01 98.7% 98.9%
4b6eB01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.67 61.0 4.45e-01 100.0% 44.1%
3su0A01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.67 61.0 5.37e-01 100.0% 83.9%
4aqzA00 2.60.40.3470 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 46.0 3.80e-01 75.6% 73.9%
2v3mA00 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.63 50.0 4.72e-01 89.7% 73.4%
2e1bA02 3.30.980.10 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 0.61 48.0 4.18e-01 88.5% 93.8%
3hyiA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.57 49.0 3.74e-01 98.7% 97.4%
2rrfA00 2.30.29.160 Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal 0.56 43.0 3.64e-01 84.6% 57.4%
6sulA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 47.0 4.19e-01 91.0% 74.1%
1lf6A01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.56 47.0 3.27e-01 94.9% 68.5%
2ewhA01 3.30.70.1710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain 0.54 39.0 3.79e-01 75.6% 88.2%
3zssA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 41.0 3.96e-01 85.9% 100.0%
1wzaA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 41.0 4.15e-01 87.2% 100.0%
5h5zA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 39.0 3.81e-01 82.1% 83.0%
2wcoA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.52 42.0 3.77e-01 92.3% 85.2%
1rwhA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.52 41.0 3.66e-01 88.5% 85.1%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.51 39.0 2.87e-01 87.2% 88.8%
7l15A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 38.0 3.50e-01 84.6% 99.1%
1vr8A00 3.40.1000.20 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like 0.51 40.0 3.43e-01 88.5% 65.2%
1xkpC00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.51 43.0 3.71e-01 96.2% 71.4%
7kz9B01 3.90.76.10 Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 0.51 39.0 3.08e-01 85.9% 62.4%
3t0pA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.50 38.0 2.96e-01 84.6% 89.6%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
134018 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.85 72.0 5.56e-01 100.0% 43.8%
257 1.1.5.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_C4 0.79 71.0 5.08e-01 100.0% 37.4%
4221728 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.75 67.0 4.72e-01 100.0% 33.0%
1099000 1.1.5.19 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_C30 0.75 69.0 5.12e-01 100.0% 44.3%
4852372 1.1.5.19 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_C30 0.74 69.0 5.04e-01 100.0% 44.5%
3404225 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.73 66.0 4.81e-01 100.0% 39.5%
3949052 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.72 59.0 5.64e-01 89.7% 86.7%
1161323 1.1.5.14 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S29 0.67 62.0 4.64e-01 100.0% 49.2%
3172153 1.1.7.20 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.61 50.0 4.40e-01 89.7% 65.2%
3806032 1.1.1.28 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp, TAXi_C, TAXi_N 0.59 50.0 3.21e-01 100.0% 68.2%
3388732 331.1.1.5 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N 0.58 32.0 3.20e-01 89.7% 47.1%
3598621 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.58 44.0 4.21e-01 83.3% 88.4%
3543177 11.1.1.1096 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_PVRIG 0.56 42.0 3.71e-01 79.5% 70.4%
5045557 304.136.1.1 ↗ a+b two layers › Alpha-beta plaits › Oligo-peptide binding protein (OPPA) insertion domain › Oligo-peptide binding protein (OPPA) insertion domain › SBP_bac_5 0.54 41.0 3.34e-01 80.8% 66.2%
3390227 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 41.0 3.79e-01 84.6% 67.6%
3468140 304.8.1.45 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.53 45.0 4.34e-01 97.4% 83.3%
5007943 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.53 34.0 3.58e-01 74.4% 72.9%
1271490 12.2.1.1 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Hyaluronate lyase-like, C-terminal domain › Hyaluronate lyase-like, C-terminal domain › Lyase_8_C 0.52 42.0 3.79e-01 92.3% 85.2%
3568964 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.52 38.0 3.67e-01 78.2% 91.1%
3282808 241.11.1.5 ↗ a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › DUF5655 0.52 41.0 3.52e-01 92.3% 54.0%
3468148 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.51 41.0 3.14e-01 89.7% 87.7%
3436173 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.51 40.0 2.76e-01 88.5% 54.6%
3932316 331.3.1.9 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.51 36.0 3.15e-01 75.6% 84.6%
4063575 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.50 38.0 3.41e-01 82.1% 62.6%