putative_replication-associated_protein

Euk-Vir

Human_fecal_virus_Jorvi3

putative_replication-associated_protein__YP_009389534__Human_fecal_virus_Jorvi3__2017082

Identity

91.4 mean pLDDT

Shotokuvirae› Cressdnaviricota› Arfiviricetes› Cirlivirales› Circoviridae› Human_fecal_virus_Jorvi3

TaxID: 2017082

View cluster (107 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 159-289

PDB

Domain cluster: rep: IMGVR_UViG_638276918_000001-638276918-638305645__D148-283

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00910.29 best	RNA_helicase	45.6	1.20e-11	64.9%	98.1%

D2 medium residues 4-100

PDB

Domain cluster: rep: replication_associated_protein__YP_009237599__Lake_Sarah-associated_circular_molecule_10_Viruses.__X__D15-119

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02407.23 best	Viral_Rep	41.5	1.80e-10	87.6%	95.1%

D3 medium residues 109-150

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2j16A00	3.90.190.10	Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily	0.72	59.0	4.29e-01	100.0%	42.9%
4nqwA02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.67	52.0	4.58e-01	88.1%	60.9%
3czpB01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.57	45.0	2.90e-01	92.9%	31.0%
3hjlA03	1.20.5.2020	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.51	40.0	4.04e-01	92.9%	95.1%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3173922	2007.2.3.4 ↗	a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase2	0.72	61.0	4.06e-01	97.6%	31.2%
5065022	2008.1.1.85 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_TdeIII	0.58	49.0	3.16e-01	100.0%	95.8%
1307621	2004.1.1.109 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PPK2	0.57	46.0	2.92e-01	92.9%	33.5%
4976647	195.1.1.1 ↗	alpha complex topology › NusB-like › NusB-like › NusB-like › NusB	0.57	43.0	3.23e-01	100.0%	39.3%
3820907	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.55	44.0	4.01e-01	100.0%	67.7%
3229627	632.2.1.21 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › ANIS5_cation-bd	0.53	37.0	3.60e-01	78.6%	92.0%