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putative_replication_associated_protein
Euk-VirGoose_circovirus
putative_replication_associated_protein__NP_150368__Goose_circovirus__146032
Identity
- Accession:
- NP_150368 ↗
- Protein ID:
- putative_replication_associated_protein
- Kingdom:
- euk
Quality
84.1
mean pLDDT
Taxonomy
Shotokuvirae›
Cressdnaviricota›
Arfiviricetes›
Cirlivirales›
Circoviridae›
Circovirus›
Goose_circovirus
TaxID: 146032
Cluster
View cluster (114 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 162-286
Domain cluster:
rep: replication-associated_protein__YP_009001745__Dragonfly_larvae_associated_circular_virus-5_Viruses.__X__D171-266
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00910.29 best | RNA_helicase | 55.3 | 1.20e-14 | 68.8% | 100.0% |
D2
medium
residues 9-103
Domain cluster:
rep: replication_associated_protein__YP_009237599__Lake_Sarah-associated_circular_molecule_10_Viruses.__X__D15-119
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02407.23 best | Viral_Rep | 64.2 | 1.50e-17 | 92.6% | 97.6% |
D3
medium
residues 114-152
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xgjB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.69 | 52.0 | 3.33e-01 | 100.0% | 16.5% |
| 2hqtK00 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.58 | 42.0 | 3.20e-01 | 87.2% | 39.3% |
| 3zrhA01 | 1.25.40.560 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.53 | 42.0 | 3.36e-01 | 100.0% | 60.4% |
| 3kzxA02 | 1.10.150.730 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.52 | 43.0 | 3.74e-01 | 94.9% | 71.0% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3618122 | 2004.1.1.55 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RNA_helicase | 0.73 | 60.0 | 3.93e-01 | 100.0% | 21.0% |
| 4000360 | 101.1.1.35 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_psq | 0.63 | 52.0 | 4.77e-01 | 100.0% | 80.0% |