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putative_replication_associated_protein
Euk-VirCryphonectria_nitschkei_chrysovirus_1
putative_replication_associated_protein__YP_009507944__Cryphonectria_nitschkei_chrysovirus_1__399394
Identity
- Accession:
- YP_009507944 ↗
- Protein ID:
- putative_replication_associated_protein
- Kingdom:
- euk
Quality
51.8
mean pLDDT
Taxonomy
Orthornavirae›
Duplornaviricota›
Chrymotiviricetes›
Ghabrivirales›
Chrysoviridae›
Alphachrysovirus›
Cryphonectria_nitschkei_chrysovirus_1
TaxID: 399394
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 18-208_243-253
Domain cluster:
rep: VP2__YP_009665170__Eriocheir_sinensis_reovirus__273810__D721-872
D2
high
residues 264-382
Domain cluster:
rep: RNA-dependent_RNA_polymerase__YP_009667008__Macrophomina_phaseolina_chrysovirus_1__1708483__D328-448
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2lm4A01 | 1.10.150.250 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Flavinator of succinate dehydrogenase | 0.60 | 44.0 | 4.85e-01 | 85.7% | 97.8% |
| 2qf9A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.53 | 38.0 | 3.49e-01 | 72.3% | 84.0% |
| 4gx0A01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.52 | 33.0 | 3.56e-01 | 86.6% | 73.8% |
| 5cmyA00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.51 | 40.0 | 3.82e-01 | 83.2% | 85.9% |
| 5w0kA01 | 3.90.380.20 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Herpesvirus glycoprotein H, domain D-II | 0.51 | 44.0 | 3.23e-01 | 94.1% | 78.8% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3712159 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.57 | 42.0 | 3.89e-01 | 76.5% | 86.5% |
| 5059239 | 180.1.1.1 ↗ | alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 | 0.56 | 41.0 | 3.07e-01 | 74.8% | 44.4% |
| 3927248 | 5059.1.1.0 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter | 0.51 | 35.0 | 2.74e-01 | 71.4% | 64.0% |
D3
medium
residues 395-487
D4
medium
residues 561-625