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putative_replication_origin-binding_protein

Euk-Vir

Brazilian_marseillevirus

putative_replication_origin-binding_protein__YP_009238722__Brazilian_marseillevirus__1813599

Identity

Accession:
YP_009238722 ↗
Protein ID:
putative_replication_origin-binding_protein
Kingdom:
euk

Quality

78.1 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Marseilleviridae› Marseillevirus› Brazilian_marseillevirus

TaxID: 1813599

Cluster

View cluster (17 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 75-182
PDB
Domain cluster: rep: origin_of_replication-binding_protein__YP_009345432__Noumeavirus__1955558__D44-192
D2 high residues 200-335
PDB
Domain cluster: rep: hypothetical_protein_H012_gp354__YP_007354538__Acanthamoeba_polyphaga_moumouvirus__1269028__D9-184
D3 high residues 368-446
PDB
Domain cluster: rep: origin_of_replication-binding_protein__YP_009345580__Noumeavirus__1955558__D365-435
D4 high residues 488-593_605-634
PDB
Domain cluster: rep: MK064563__AZI75768.1__SBFV2-gp01__00001__D223-383
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02399.22 best Herpes_ori_bp 62.2 4.00e-17 82.3% 12.8%
D5 high residues 643-771_837-867
PDB
Domain cluster: rep: MK064563__AZI75768.1__SBFV2-gp01__00001__D223-383
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02399.22 best Herpes_ori_bp 33.7 1.60e-08 80.0% 14.4%
D6 high residues 938-1088
PDB
Domain cluster: rep: putative_helicase__YP_009238527__Brazilian_marseillevirus__1813599__D933-1071
D7 medium residues 772-836
PDB
Domain cluster: rep: putative_origin_of_replication_binding_protein__YP_009506852__Tunisvirus_fontaine2__1421067__D775-831
D8 medium residues 868-937
PDB
Domain cluster: rep: conserved_putative_helicase__YP_009094625__Melbournevirus__1560514__D838-914
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3e3vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 31.0 3.50e-01 100.0% 58.5%
1s8nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 36.0 3.99e-01 72.9% 74.1%
3ckyA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.60 51.0 4.20e-01 97.1% 85.8%
5yk4A03 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.60 41.0 3.33e-01 72.9% 100.0%
2g80A02 1.10.720.60 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.58 43.0 4.26e-01 100.0% 74.4%
3nbiA01 1.10.8.1020 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain 0.56 36.0 3.93e-01 84.3% 79.3%
2yjgA01 3.90.226.30 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › LarA, C-terminal domain 0.56 47.0 3.58e-01 98.6% 94.1%
6ks6G01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.54 46.0 3.20e-01 100.0% 90.8%
1qdmA03 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.53 42.0 4.18e-01 94.3% 100.0%
2hkvA01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.53 45.0 3.67e-01 98.6% 63.1%
1q9cA01 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.53 45.0 3.56e-01 97.1% 93.9%
1oqcA00 1.20.120.310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain 0.52 40.0 3.52e-01 85.7% 88.4%
2dceA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 36.0 3.57e-01 75.7% 80.3%
2va8A03 1.10.3380.30 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.51 39.0 2.79e-01 82.9% 36.0%
4a18O00 3.30.390.110 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.51 36.0 2.97e-01 72.9% 74.6%
4eqyA02 1.20.1180.10 Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain 0.50 34.0 3.49e-01 72.9% 90.0%
4p17A02 1.10.8.270 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › putative rabgap domain of human tbc1 domain family member 14 like domains 0.50 35.0 3.01e-01 72.9% 69.1%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3287744 103.12.1.1 ↗ alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › ANTAR 0.63 38.0 4.11e-01 81.4% 71.7%
5083091 3651.1.1.0 ↗ alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain 0.61 42.0 3.65e-01 74.3% 54.8%
3960463 103.12.1.0 ↗ alpha arrays › RuvA-C › ANTAR domain › ANTAR domain 0.60 37.0 4.01e-01 77.1% 73.3%
3270478 6155.1.1.4 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MPC 0.53 37.0 3.25e-01 71.4% 77.1%
3394395 1134.1.1.2 ↗ alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain › INT_SG_DDX_CT_C 0.52 38.0 3.68e-01 78.6% 75.0%
5009371 5060.2.1.1 ↗ alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.52 41.0 3.39e-01 85.7% 57.6%
5063573 604.5.1.2 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU 0.52 44.0 3.29e-01 97.1% 94.1%
4204950 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.51 36.0 3.48e-01 74.3% 75.0%
4026316 2003.1.5.45 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_8 0.51 43.0 3.04e-01 94.3% 100.0%
5036033 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 36.0 2.29e-01 77.1% 22.8%