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putative_ribonuclease_H

Euk-Vir

Aureococcus_anophagefferens_virus

putative_ribonuclease_H__YP_009052315__Aureococcus_anophagefferens_virus__1474867

Identity

Accession:
YP_009052315 ↗
Protein ID:
putative_ribonuclease_H
Kingdom:
euk

Quality

82.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-21_36-166
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02739.23 best 5_3_exonuc_N 68.1 1.10e-18 100.0% 86.6%
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3zdbA01 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.84 72.0 7.16e-01 100.0% 86.0%
1xo1A02 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.83 64.0 6.29e-01 100.0% 75.5%
1tfrA01 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.80 74.0 6.61e-01 100.0% 71.8%
1kjnA00 3.40.50.10160 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › MTH777-like 0.69 46.0 4.65e-01 100.0% 67.1%
4ru1A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.68 39.0 4.06e-01 100.0% 60.7%
4rk5A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.68 39.0 4.15e-01 100.0% 63.9%
5v07Z01 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.67 62.0 5.59e-01 100.0% 78.6%
2wteA01 3.40.50.11700 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.64 48.0 5.01e-01 100.0% 84.8%
8a26A01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.63 49.0 3.97e-01 80.8% 65.2%
7toiA01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.61 49.0 4.33e-01 84.1% 60.9%
1knqA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 47.0 4.55e-01 81.5% 96.5%
3quaA00 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 48.0 4.56e-01 100.0% 72.1%
3iacC01 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.59 47.0 3.45e-01 82.1% 64.3%
4b79B00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 45.0 3.90e-01 81.5% 59.2%
4o6vA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 44.0 3.85e-01 80.1% 59.8%
1lw7A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.57 47.0 4.55e-01 100.0% 78.7%
3hgmA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.57 50.0 5.14e-01 100.0% 98.6%
3aawC01 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.57 52.0 4.53e-01 100.0% 93.4%
1k7cA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.56 43.0 3.74e-01 81.5% 69.1%
5uivA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 44.0 3.92e-01 85.4% 93.8%
3u62A02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 40.0 4.33e-01 100.0% 89.1%
3vc7A00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 43.0 3.68e-01 81.5% 89.5%
2zxeA03 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.53 50.0 4.76e-01 100.0% 86.8%
5bq3A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 44.0 4.36e-01 88.7% 85.8%
3dcpA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.53 47.0 3.91e-01 100.0% 95.3%
3gbvA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 42.0 4.23e-01 84.8% 87.9%
3a4lB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 41.0 3.92e-01 84.8% 95.5%
2lciA00 3.40.50.11230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 42.0 4.45e-01 84.1% 97.0%
4gc3A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.52 39.0 3.24e-01 82.1% 44.5%
4y9tA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 44.0 4.23e-01 92.7% 86.4%
1hl8A01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.52 47.0 3.64e-01 100.0% 60.6%
2yvtA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.52 46.0 3.91e-01 98.7% 90.2%
2bdtA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 40.0 3.83e-01 81.5% 95.9%
1kblA04 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.51 45.0 3.49e-01 97.4% 91.8%
3kfvA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 40.0 4.14e-01 84.1% 97.9%
4wzzA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.50 42.0 4.20e-01 92.1% 93.1%
3vaaA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 39.0 3.77e-01 84.1% 98.9%
2hqbA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.50 32.0 3.36e-01 70.2% 71.8%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4125023 2006.1.4.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.85 80.0 7.62e-01 100.0% 86.5%
4995752 2006.1.4.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.84 79.0 7.61e-01 100.0% 89.1%
3838776 2006.1.4.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.84 78.0 7.55e-01 100.0% 88.5%
4355422 2006.1.4.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.84 74.0 6.98e-01 100.0% 80.0%
3261281 2006.1.4.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.84 77.0 7.41e-01 100.0% 86.9%
4322588 2006.1.4.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.83 77.0 7.20e-01 99.3% 81.7%
4157264 2006.1.4.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.83 79.0 7.36e-01 100.0% 85.6%
4031817 2006.1.4.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.82 75.0 7.21e-01 100.0% 85.3%
4040391 2006.1.4.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.82 78.0 7.28e-01 100.0% 84.4%
4238071 2006.1.4.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.81 77.0 7.32e-01 100.0% 86.3%
2074443 2006.1.4.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.81 76.0 7.26e-01 100.0% 86.8%
3942272 2006.1.4.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.80 74.0 7.12e-01 100.0% 87.6%
3739745 2006.1.4.20 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_I_2 0.74 64.0 5.28e-01 100.0% 52.8%
3838580 2006.1.4.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.73 68.0 6.43e-01 100.0% 85.6%
3937732 2006.1.4.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.73 61.0 5.66e-01 100.0% 70.5%
3882124 2006.1.4.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.73 63.0 5.51e-01 100.0% 63.7%
3683988 2006.1.4.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.70 66.0 5.79e-01 100.0% 77.1%
4001799 2006.1.4.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.70 66.0 5.40e-01 100.0% 62.2%
3660261 2006.1.4.7 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › NYN_YacP 0.70 54.0 5.10e-01 100.0% 68.6%
3472483 2006.1.4.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.70 64.0 4.96e-01 98.0% 89.7%
4853371 2005.1.1.24 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › DPRP 0.69 50.0 5.60e-01 94.0% 99.1%
3937112 2006.1.4.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.69 63.0 5.25e-01 100.0% 62.5%
3428426 2006.1.4.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I 0.68 64.0 5.72e-01 100.0% 76.6%
4020826 2006.1.4.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.67 62.0 5.19e-01 100.0% 63.5%
3949665 2006.1.4.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.65 60.0 5.75e-01 99.3% 91.8%
3713746 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.63 45.0 4.87e-01 100.0% 88.0%
3457387 2005.1.1.41 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CHX17_C 0.62 55.0 5.23e-01 100.0% 81.1%
3345831 2005.1.1.78 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CHX17_2nd, CHX17_C 0.61 53.0 4.06e-01 100.0% 42.5%
5081472 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.60 52.0 5.26e-01 100.0% 94.1%
3201725 2004.1.1.208 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_33 0.60 47.0 4.26e-01 84.8% 96.2%
3832178 2006.1.4.7 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › NYN_YacP 0.59 54.0 5.00e-01 100.0% 80.0%
4948439 2004.1.1.79 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin 0.58 46.0 4.24e-01 84.1% 100.0%
3482144 2004.1.1.50 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin 0.57 46.0 4.09e-01 84.1% 91.9%
5074975 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.57 49.0 5.02e-01 100.0% 97.2%
3296979 2005.1.1.41 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CHX17_C 0.57 52.0 4.81e-01 100.0% 79.5%
3961444 7527.1.1.2 a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › CoA_transf_3 0.57 42.0 3.15e-01 100.0% 30.1%
1779556 3949.1.1.1 alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › IPPT 0.57 44.0 3.76e-01 100.0% 50.4%
3981866 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.56 49.0 4.80e-01 100.0% 85.9%
4043560 2004.1.1.79 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin 0.56 44.0 4.08e-01 84.1% 99.0%
4995711 2004.1.1.208 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_33 0.56 39.0 3.82e-01 70.9% 98.2%
4988572 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.56 49.0 4.99e-01 100.0% 97.3%
4959799 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.55 47.0 4.80e-01 100.0% 93.9%
5000511 2006.1.4.3 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › NYN 0.55 45.0 4.40e-01 100.0% 81.1%
4012661 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 43.0 3.95e-01 84.8% 99.5%
4994559 2004.1.1.192 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 0.55 43.0 3.82e-01 83.4% 84.5%
4972761 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 43.0 3.73e-01 84.1% 96.6%
5054523 2004.1.1.192 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 0.54 42.0 4.07e-01 84.1% 100.0%
4979556 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.54 48.0 4.35e-01 100.0% 85.0%
4957006 2004.1.1.191 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_17 0.54 43.0 4.02e-01 85.4% 96.8%
4926882 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.54 48.0 4.87e-01 100.0% 96.7%
3318810 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.53 47.0 4.65e-01 100.0% 89.7%
3839988 2004.1.1.208 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_33 0.53 37.0 3.67e-01 100.0% 66.1%
3825543 2005.1.1.43 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CHX17_2nd 0.53 48.0 4.55e-01 100.0% 83.9%
4111396 2004.1.1.47 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › G-alpha 0.53 42.0 3.68e-01 84.8% 55.9%
3808620 2005.1.1.43 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CHX17_2nd 0.52 48.0 4.53e-01 100.0% 86.1%
3964625 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.52 46.0 4.65e-01 100.0% 96.7%
5082342 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.52 46.0 4.71e-01 100.0% 99.3%
4317307 2004.1.1.60 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SKI 0.52 39.0 3.78e-01 79.5% 99.4%
3519997 2004.1.1.50 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin 0.51 46.0 4.16e-01 96.7% 95.0%
4645891 2004.1.1.105 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinase-PPPase 0.51 40.0 3.97e-01 84.1% 78.1%
4061843 2004.1.1.106 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RapZ-like_N 0.51 45.0 4.42e-01 96.7% 98.8%
5053129 2004.1.1.70 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › dNK 0.51 44.0 4.03e-01 96.7% 96.7%
4946309 2004.1.1.162 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.51 38.0 3.12e-01 78.8% 44.8%
4586635 2004.1.1.106 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RapZ-like_N 0.50 44.0 4.24e-01 94.7% 97.6%