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putative_ribonuclease_III

Euk-Vir

Lausannevirus

putative_ribonuclease_III__YP_004347211__Lausannevirus__999883

Identity

Accession:
YP_004347211 ↗
Protein ID:
putative_ribonuclease_III
Kingdom:
euk

Quality

78.6 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Marseilleviridae› Losannavirus› Lausannevirus

TaxID: 999883

Cluster

View cluster (30 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-202
PDB
Domain cluster: rep: ribonuclease_III__YP_009345357__Noumeavirus__1955558__D4-208
D2 high residues 209-315
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3c4bA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.85 52.0 6.60e-01 86.9% 100.0%
1di2A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.83 53.0 6.53e-01 82.2% 100.0%
2nugB02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.83 54.0 6.55e-01 86.9% 100.0%
1x49A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.81 52.0 6.35e-01 83.2% 100.0%
2dmyA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.77 48.0 5.09e-01 90.7% 70.1%
3rv0B03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.75 53.0 6.07e-01 91.6% 97.5%
1t4lB00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.73 51.0 5.57e-01 88.8% 85.6%
3f6gA02 3.30.160.340 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.73 43.0 5.46e-01 74.8% 100.0%
1vw4502 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.67 54.0 5.79e-01 97.2% 98.9%
2l6mA00 3.30.160.400 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 50.0 5.20e-01 90.7% 90.1%
2w20B01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.52 43.0 3.01e-01 92.5% 75.8%
1eurA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.52 41.0 2.97e-01 89.7% 83.4%
1k3eB02 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.52 38.0 3.84e-01 76.6% 90.5%
4boeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 33.0 3.04e-01 75.7% 45.5%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3333293 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.89 59.0 7.09e-01 95.3% 97.3%
4194213 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.87 56.0 6.93e-01 82.2% 100.0%
3487251 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.87 55.0 6.35e-01 90.7% 86.3%
4319496 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.86 55.0 6.83e-01 84.1% 100.0%
3370322 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.86 57.0 6.29e-01 87.9% 81.1%
3707314 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.85 55.0 6.19e-01 90.7% 83.5%
4487255 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.82 55.0 6.54e-01 88.8% 97.3%
4203072 330.1.1.19 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_2 0.81 55.0 5.64e-01 85.0% 71.4%
4072052 330.1.1.19 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_2 0.81 55.0 6.33e-01 84.1% 92.5%
3742474 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.81 54.0 6.42e-01 88.8% 97.3%
3222974 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.81 61.0 6.15e-01 88.8% 79.0%
3435374 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.80 56.0 6.26e-01 89.7% 89.4%
4208191 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.80 53.0 6.10e-01 85.0% 90.0%
3823735 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.80 54.0 6.01e-01 87.9% 85.9%
3462089 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.79 56.0 6.32e-01 89.7% 91.8%
3390831 330.1.1.10 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_MRPL44 0.78 53.0 6.08e-01 86.0% 92.5%
3928223 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.78 57.0 6.26e-01 85.0% 90.0%
4266613 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.78 55.0 6.17e-01 92.5% 91.8%
3831398 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.78 55.0 5.96e-01 87.9% 85.6%
3592745 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.77 54.0 5.32e-01 93.5% 67.0%
3451695 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.77 60.0 6.52e-01 93.5% 96.7%
3782775 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.76 54.0 5.88e-01 90.7% 86.7%
4200278 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.76 54.0 6.22e-01 87.9% 97.5%
3599949 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.74 48.0 5.11e-01 84.1% 74.7%
3784375 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.74 52.0 5.96e-01 87.9% 97.5%
3443030 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.73 53.0 6.00e-01 85.0% 100.0%
3704402 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.73 62.0 6.08e-01 96.3% 83.5%
3190674 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.72 55.0 5.94e-01 86.9% 93.3%
3599937 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.71 58.0 6.04e-01 93.5% 93.0%
4023575 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.71 55.0 5.83e-01 89.7% 91.6%
3614530 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.70 54.0 5.30e-01 92.5% 74.8%
3249882 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.70 58.0 6.10e-01 86.9% 100.0%
3596524 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.70 59.0 6.27e-01 90.7% 100.0%
3715587 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.69 54.0 5.16e-01 93.5% 72.5%
3713548 330.1.1.22 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › PF26536 0.69 60.0 5.85e-01 94.4% 85.2%
3395408 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.69 56.0 5.63e-01 100.0% 84.5%
3496171 330.1.1.10 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_MRPL44 0.69 52.0 5.61e-01 97.2% 93.3%
3686372 330.1.1.19 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_2 0.69 56.0 5.73e-01 85.0% 93.3%
3606640 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.67 58.0 5.81e-01 92.5% 96.4%
3676562 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.67 62.0 4.82e-01 96.3% 94.1%
1420619 330.1.1.10 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_MRPL44 0.67 54.0 5.79e-01 97.2% 98.9%
3739406 330.1.1.9 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dcr1-like_dsRNA-bd_dom 0.65 50.0 5.13e-01 85.0% 82.9%
3607858 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.65 53.0 5.36e-01 94.4% 87.6%
3432658 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.65 45.0 4.70e-01 87.9% 80.0%
3606641 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.63 48.0 4.77e-01 90.7% 78.2%
3490893 330.1.1.10 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_MRPL44 0.59 53.0 5.00e-01 97.2% 81.5%
4341158 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.58 47.0 4.06e-01 86.0% 87.7%
3222747 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.57 30.0 3.09e-01 79.4% 53.0%
3430977 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.55 38.0 3.28e-01 86.0% 44.3%
3933646 2484.5.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.53 38.0 3.89e-01 76.6% 79.0%
4981268 2484.1.1.59 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.53 40.0 3.08e-01 80.4% 62.7%
4166560 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.53 33.0 2.78e-01 84.1% 33.5%
3473771 11.2.1.8 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PTEN_C2 0.52 41.0 3.75e-01 86.9% 86.9%
3788663 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.50 40.0 3.08e-01 86.0% 68.4%
3733891 5.1.4.276 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_WDR75_2nd 0.50 41.0 2.79e-01 93.5% 58.9%