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putative_ribonucleoside-diphosphate_reductase_protein

Euk-Vir

Emiliania_huxleyi_virus_86

putative_ribonucleoside-diphosphate_reductase_protein__YP_294186__Emiliania_huxleyi_virus_86__181082

Identity

Accession:: YP_294186 ↗
Protein ID:: putative_ribonucleoside-diphosphate_reductase_protein
Kingdom:: euk

Quality

93.0 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Algavirales› Phycodnaviridae› Coccolithovirus› Emiliania_huxleyi_virus_86

TaxID: 181082

Cluster

View cluster (122 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-86

PDB

Domain cluster: rep: IMGVR_UViG_3300007266_000133-3300007266-Ga0101450_1063124__D4-90

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03477.22 best	ATP-cone	48.4	1.60e-12	100.0%	96.6%

D2 medium residues 87-204

PDB

Domain cluster: rep: NC_007021.1__YP_238596.1__TwortORF045__00062__D44-158

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00317.27 best	Ribonuc_red_lgN	67.9	9.40e-19	55.9%	88.3%

D3 medium residues 205-246_269-299

PDB

Domain cluster: rep: MW074125.1__QXO06237.1__X__00148__D220-303

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02867.21 best	Ribonuc_red_lgC	34.5	1.40e-08	49.3%	6.5%
PF02867.21	Ribonuc_red_lgC	29.1	5.90e-07	42.5%	5.7%

D4 medium residues 247-268_322-364

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02867.21 best	Ribonuc_red_lgC	47.3	1.70e-12	72.3%	8.2%

D5 medium residues 300-321_365-403

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02867.21 best	Ribonuc_red_lgC	32.6	4.90e-08	67.2%	7.2%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2jaeA03	1.20.1440.240	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) ›	0.62	35.0	2.95e-01	100.0%	32.7%
1dd9A03	1.20.50.20	Mainly Alpha › Up-down Bundle › Pheromone ER-1 › DnaG, RNA polymerase domain, helical bundle	0.50	31.0	3.18e-01	80.3%	64.4%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4015532	2500.1.1.0 ↗	a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel	1.00	96.0	5.37e-01	100.0%	18.1%
3286211	101.1.4.0 ↗	alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like	0.52	44.0	4.49e-01	95.1%	100.0%

D6 medium residues 454-471_516-537_589-618

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02867.21 best	Ribonuc_red_lgC	34.0	1.80e-08	47.1%	5.9%

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1xjkA00	3.20.70.20	Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain ›	0.94	89.0	5.02e-01	100.0%	26.3%
1r1rA02	3.20.70.20	Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain ›	0.89	79.0	4.58e-01	94.3%	32.9%
4q6bA02	3.40.50.2300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator	0.61	47.0	3.85e-01	84.3%	87.3%
2iqcA00	1.25.40.490	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.59	42.0	3.16e-01	74.3%	60.7%
3h36A00	1.10.10.400	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain	0.54	44.0	4.24e-01	87.1%	88.5%
1ihuA01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.54	41.0	2.96e-01	88.6%	75.1%
3fgrA02	1.10.439.20	Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Phospholipase B-like, domain 2	0.53	36.0	2.95e-01	94.3%	38.3%
3obwA03	3.30.1330.30	Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12	0.52	40.0	3.67e-01	88.6%	64.7%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4994375	2500.1.1.0 ↗	a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel	0.97	93.0	5.38e-01	100.0%	34.0%
4990406	2500.1.1.2 ↗	a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC	0.95	90.0	5.13e-01	100.0%	34.7%
4927596	604.5.1.0 ↗	alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895)	0.52	46.0	3.75e-01	97.1%	95.4%

D7 medium residues 538-588

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02867.21 best	Ribonuc_red_lgC	41.0	1.50e-10	100.0%	9.7%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2wghA00	3.20.70.20	Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain ›	0.99	95.0	5.17e-01	100.0%	7.9%
4l8kA01	3.30.750.44	Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA ›	0.53	36.0	3.16e-01	74.5%	42.2%
3tviA01	3.40.1160.10	Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like	0.50	35.0	2.33e-01	78.4%	16.7%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4015532	2500.1.1.0 ↗	a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel	1.00	96.0	5.26e-01	100.0%	8.9%
996122	2500.1.1.2 ↗	a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC	0.99	94.0	5.18e-01	100.0%	8.8%
4994375	2500.1.1.0 ↗	a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel	0.84	76.0	4.32e-01	100.0%	10.2%
3990885	164.1.1.0 ↗	alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II	0.53	42.0	3.70e-01	100.0%	73.3%

D8 medium residues 619-677

PDB

Domain cluster: rep: IMGVR_UViG_3300006567_000026-3300006567-Ga0099958_11086953__D213-268

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02867.21 best	Ribonuc_red_lgC	40.1	2.70e-10	100.0%	11.1%