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putative_ribonulease_HII
Euk-VirAureococcus_anophagefferens_virus
putative_ribonulease_HII__YP_009052318__Aureococcus_anophagefferens_virus__1474867
Identity
- Accession:
- YP_009052318 ↗
- Protein ID:
- putative_ribonulease_HII
- Kingdom:
- euk
Quality
75.3
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Imitervirales›
Schizomimiviridae›
Kratosvirus›
Aureococcus_anophagefferens_virus
TaxID: 1474867
Cluster
View cluster (9 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-143
Domain cluster:
rep: ribonuclease_HII__YP_008052440__Phaeocystis_globosa_virus__251749__D18-172
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01351.26 best | RNase_HII | 66.3 | 5.20e-18 | 98.6% | 71.9% |
D2
medium
residues 146-199
Domain cluster:
rep: ribonuclease_HII__YP_008052440__Phaeocystis_globosa_virus__251749__D179-229
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2etjA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.83 | 70.0 | 4.61e-01 | 98.1% | 23.8% |
| 3ma5A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.55 | 39.0 | 3.42e-01 | 77.8% | 60.0% |
| 2bddA00 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.51 | 45.0 | 3.41e-01 | 100.0% | 66.9% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| None | — | 0.89 | 72.0 | 4.77e-01 | 96.3% | 24.1% | |
| None | — | 0.88 | 71.0 | 4.83e-01 | 94.4% | 26.1% | |
| 4271759 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.88 | 71.0 | 4.58e-01 | 94.4% | 21.4% |
| 4398538 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.87 | 75.0 | 4.85e-01 | 100.0% | 23.2% |
| 3701846 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.86 | 73.0 | 4.52e-01 | 98.1% | 17.9% |
| 4297736 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.84 | 74.0 | 4.98e-01 | 100.0% | 28.1% |
| 4165286 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.84 | 72.0 | 4.72e-01 | 100.0% | 24.3% |
| 4175479 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.83 | 72.0 | 4.59e-01 | 100.0% | 21.7% |
| 3838396 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.83 | 73.0 | 4.87e-01 | 100.0% | 26.7% |
| 4176554 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.82 | 71.0 | 4.41e-01 | 100.0% | 18.5% |
| None | — | 0.82 | 70.0 | 4.55e-01 | 100.0% | 22.7% | |
| None | — | 0.80 | 73.0 | 4.85e-01 | 100.0% | 27.7% | |
| None | — | 0.80 | 72.0 | 4.62e-01 | 100.0% | 77.5% | |
| 3720343 | 145.1.1.1 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box | 0.53 | 37.0 | 3.27e-01 | 83.3% | 48.2% |
| 3889374 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.52 | 38.0 | 2.41e-01 | 83.3% | 29.9% |
| 4966073 | 2007.1.5.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like | 0.51 | 41.0 | 2.95e-01 | 100.0% | 43.4% |