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putative_rifampin_resistance_protein
Euk-VirParapoxvirus_red_deer_HL953
putative_rifampin_resistance_protein__YP_009112814__Parapoxvirus_red_deer_HL953__1579460
Identity
- Accession:
- YP_009112814 ↗
- Protein ID:
- putative_rifampin_resistance_protein
- Kingdom:
- euk
Quality
86.1
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Pokkesviricetes›
Chitovirales›
Poxviridae›
Parapoxvirus›
Parapoxvirus_red_deer/HL953
TaxID: 1579460
Cluster
View cluster (35 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 277-416
Domain cluster:
rep: rifampicin_resistance_protein__YP_009001666__Anomala_cuprea_entomopoxvirus__62099__D266-416
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03340.20 best | Pox_Rif | 235.3 | 1.70e-69 | 100.0% | 25.8% |
D2
medium
residues 39-61_160-195
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03340.20 best | Pox_Rif | 38.5 | 7.00e-10 | 64.4% | 6.6% |
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2fggA01 | 3.30.160.240 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 | 0.73 | 43.0 | 3.99e-01 | 84.7% | 46.7% |
| 2kd2A01 | 2.40.128.180 | Mainly Beta › Beta Barrel › Lipocalin › | 0.70 | 39.0 | 3.46e-01 | 86.4% | 38.1% |
| 3lidA03 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.70 | 47.0 | 3.96e-01 | 89.8% | 42.7% |
| 3hvnA02 | 3.30.1040.20 | Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › | 0.61 | 42.0 | 4.41e-01 | 78.0% | 79.2% |
| 4zwnB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.60 | 47.0 | 2.95e-01 | 86.4% | 23.5% |
| 4pmwA04 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 39.0 | 3.43e-01 | 78.0% | 45.1% |
| 4z9cB00 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.59 | 42.0 | 3.41e-01 | 88.1% | 39.1% |
| 5fgoA00 | 3.10.450.700 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 40.0 | 3.98e-01 | 79.7% | 67.7% |
| 2wtmA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.58 | 45.0 | 2.99e-01 | 86.4% | 30.0% |
| 2pokA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.57 | 42.0 | 2.64e-01 | 78.0% | 35.8% |
| 2wb7A02 | 2.60.40.2050 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 42.0 | 3.09e-01 | 78.0% | 53.5% |
| 3d4eA02 | 3.30.1450.10 | Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › | 0.57 | 38.0 | 3.47e-01 | 84.7% | 52.6% |
| 7zqiA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 42.0 | 3.78e-01 | 83.1% | 75.6% |
| 2hn1A01 | 3.30.460.20 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like | 0.56 | 34.0 | 2.63e-01 | 84.7% | 24.6% |
| 4hxfB02 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.56 | 43.0 | 2.85e-01 | 86.4% | 27.7% |
| 4dloA03 | 2.60.220.50 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › | 0.55 | 40.0 | 2.97e-01 | 79.7% | 56.7% |
| 1l3aA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.55 | 45.0 | 3.22e-01 | 88.1% | 34.9% |
| 6a2bA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 43.0 | 3.78e-01 | 86.4% | 75.3% |
| 5hdwA00 | 2.60.40.1470 | Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain | 0.55 | 44.0 | 3.42e-01 | 86.4% | 64.1% |
| 1q0rA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.54 | 42.0 | 2.72e-01 | 86.4% | 72.4% |
| 3b42A00 | 3.30.450.290 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.54 | 39.0 | 3.08e-01 | 78.0% | 36.5% |
| 4bfiB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 43.0 | 3.79e-01 | 88.1% | 70.0% |
| 2d5wA02 | 3.90.76.10 | Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 | 0.54 | 40.0 | 3.21e-01 | 79.7% | 70.9% |
| 6xy9A01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.54 | 42.0 | 2.72e-01 | 88.1% | 66.3% |
| 7bj4A01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.54 | 43.0 | 2.58e-01 | 86.4% | 14.0% |
| 5ds1A00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 40.0 | 3.44e-01 | 83.1% | 51.1% |
| 3l0qA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 38.0 | 2.30e-01 | 76.3% | 12.1% |
| 3qitB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 43.0 | 2.77e-01 | 91.5% | 53.4% |
| 3oonA00 | 3.30.1330.60 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain | 0.53 | 39.0 | 3.17e-01 | 79.7% | 98.2% |
| 3cp3A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 41.0 | 3.22e-01 | 86.4% | 67.7% |
| 6yn2A01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 41.0 | 2.65e-01 | 88.1% | 63.7% |
| 4i3fA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 41.0 | 2.66e-01 | 88.1% | 66.1% |
| 6ezmA01 | 3.30.230.40 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › Imidazole glycerol phosphate dehydratase; domain 1 | 0.52 | 38.0 | 3.14e-01 | 78.0% | 67.6% |
| 5gxuB01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.52 | 40.0 | 3.33e-01 | 91.5% | 58.2% |
| 2i0kA02 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.51 | 38.0 | 3.01e-01 | 81.4% | 99.2% |
| 2e3jA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 38.0 | 2.44e-01 | 86.4% | 73.4% |
| 2qtlA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.50 | 43.0 | 3.60e-01 | 100.0% | 71.0% |
| 4nswA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 38.0 | 3.22e-01 | 86.4% | 100.0% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3217266 | 11.1.1.532 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C6 | 0.63 | 50.0 | 4.66e-01 | 86.4% | 72.0% |
| 3182356 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.61 | 41.0 | 3.20e-01 | 89.8% | 30.4% |
| 3939966 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.61 | 39.0 | 3.14e-01 | 83.1% | 34.5% |
| 3675847 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.61 | 43.0 | 2.73e-01 | 86.4% | 14.3% |
| 3896317 | 11.1.1.640 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ZP-N | 0.59 | 44.0 | 3.65e-01 | 84.7% | 47.0% |
| 5057515 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.58 | 40.0 | 4.02e-01 | 86.4% | 70.0% |
| 3256938 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.58 | 47.0 | 3.83e-01 | 88.1% | 73.6% |
| 3892777 | 11.1.1.640 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ZP-N | 0.58 | 44.0 | 3.55e-01 | 79.7% | 45.7% |
| 3179194 | 12.6.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related | 0.58 | 41.0 | 3.72e-01 | 74.6% | 95.0% |
| 3593930 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.58 | 42.0 | 3.36e-01 | 81.4% | 38.3% |
| 3532044 | 11.1.1.640 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ZP-N | 0.57 | 47.0 | 3.76e-01 | 93.2% | 46.1% |
| 3598409 | 244.1.1.40 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › BCS1_N | 0.57 | 40.0 | 3.21e-01 | 78.0% | 38.3% |
| 3528858 | 274.1.1.47 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › UPF0492 | 0.56 | 41.0 | 3.25e-01 | 78.0% | 39.2% |
| 3631248 | 220.1.1.20 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH | 0.56 | 44.0 | 3.50e-01 | 86.4% | 41.6% |
| 3972065 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.56 | 42.0 | 3.13e-01 | 79.7% | 49.0% |
| 3206295 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.56 | 41.0 | 2.74e-01 | 79.7% | 41.6% |
| 339219 | 223.1.1.46 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › Mcp40H-20_sensor | 0.55 | 42.0 | 3.25e-01 | 83.1% | 38.8% |
| 3991175 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.54 | 39.0 | 4.06e-01 | 78.0% | 89.1% |
| 3503347 | 223.1.1.18 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › sCache_4 | 0.54 | 47.0 | 3.35e-01 | 100.0% | 69.5% |
| 3419536 | 247.1.1.13 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_4 | 0.54 | 48.0 | 3.28e-01 | 100.0% | 35.8% |
| 3717061 | 304.107.1.5 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › BCS1_N | 0.54 | 40.0 | 3.23e-01 | 84.7% | 40.0% |
| 3725265 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.54 | 41.0 | 2.62e-01 | 81.4% | 22.6% |
| 4168202 | 101.17.1.0 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins | 0.54 | 41.0 | 3.63e-01 | 86.4% | 57.0% |
| 4012772 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 41.0 | 3.23e-01 | 81.4% | 40.0% |
| 3612635 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.54 | 43.0 | 3.37e-01 | 88.1% | 51.2% |
| 3317514 | 7579.1.1.95 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1, Hydrolase_4 | 0.54 | 41.0 | 2.61e-01 | 86.4% | 71.6% |
| 2723636 | 5.1.2.5 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_68 | 0.54 | 43.0 | 2.56e-01 | 86.4% | 13.3% |
| 3495780 | 304.107.1.5 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › BCS1_N | 0.53 | 37.0 | 2.76e-01 | 72.9% | 72.9% |
| 3724739 | 2485.1.1.34 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Rdx | 0.53 | 40.0 | 3.30e-01 | 81.4% | 80.9% |
| 3598635 | 206.1.2.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase | 0.52 | 41.0 | 2.57e-01 | 84.7% | 31.0% |
| 5003677 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.52 | 38.0 | 3.64e-01 | 79.7% | 68.6% |
| 4108127 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.52 | 39.0 | 3.41e-01 | 86.4% | 52.6% |
| 3958503 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.52 | 44.0 | 3.47e-01 | 100.0% | 61.5% |
| 3810053 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.52 | 45.0 | 3.26e-01 | 94.9% | 89.7% |
| 3725227 | 519.1.1.1 ↗ | a+b two layers › mRNA decapping enzyme DcpS N-terminal domain › mRNA decapping enzyme DcpS N-terminal domain › mRNA decapping enzyme DcpS N-terminal domain › DcpS | 0.51 | 40.0 | 3.65e-01 | 86.4% | 68.8% |
| 3370846 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.51 | 38.0 | 2.28e-01 | 79.7% | 11.7% |
| 3614530 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.51 | 40.0 | 3.27e-01 | 88.1% | 53.0% |
| 4488657 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.51 | 36.0 | 2.83e-01 | 81.4% | 34.6% |
| 3934033 | 2484.1.1.212 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RT_RNaseH | 0.51 | 37.0 | 2.79e-01 | 83.1% | 33.3% |
| 3476563 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 38.0 | 3.07e-01 | 81.4% | 42.5% |
| 5029467 | 247.1.1.12 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_3 | 0.51 | 37.0 | 2.57e-01 | 84.7% | 22.1% |
| 4121419 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.50 | 38.0 | 3.18e-01 | 84.7% | 53.6% |
| 3613385 | 220.1.1.21 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › SPT16 | 0.50 | 38.0 | 3.04e-01 | 83.1% | 40.0% |
| 3646089 | 2.1.1.223 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28721 | 0.50 | 40.0 | 3.64e-01 | 88.1% | 66.3% |
| 3385834 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.50 | 40.0 | 3.01e-01 | 98.3% | 71.4% |
D3
medium
residues 62-159_196-218
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03340.20 best | Pox_Rif | 153.6 | 9.90e-45 | 83.5% | 18.1% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5tipA01 | 2.70.9.10 | Mainly Beta › Distorted Sandwich › Adenovirus Type 2 Hexon; domain 4 › Adenovirus Type 2 Hexon, domain 4 | 0.73 | 69.0 | 5.85e-01 | 100.0% | 81.4% |
| 1hx6B01 | 2.70.9.30 | Mainly Beta › Distorted Sandwich › Adenovirus Type 2 Hexon; domain 4 › Viral coat protein p3 | 0.71 | 64.0 | 5.16e-01 | 100.0% | 76.8% |
| 1hx6A02 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.60 | 47.0 | 4.48e-01 | 99.2% | 71.6% |
| 2x3gA00 | 3.30.70.1910 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 38.0 | 3.95e-01 | 94.2% | 71.6% |
| 8hhvA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.55 | 37.0 | 3.73e-01 | 91.7% | 68.0% |
| 8a28A02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 37.0 | 3.51e-01 | 93.4% | 58.5% |
| 1gnyA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.52 | 40.0 | 3.76e-01 | 93.4% | 65.4% |
| 1o51A00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 35.0 | 4.01e-01 | 95.0% | 96.6% |
| 1lvmA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.51 | 28.0 | 2.99e-01 | 96.7% | 58.5% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4883559 | 10.2.1.33 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Pox_Rif | 0.99 | 97.0 | 7.73e-01 | 100.0% | 74.8% |
| 2389747 | 10.2.1.33 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Pox_Rif | 0.99 | 97.0 | 7.59e-01 | 100.0% | 72.0% |
| 4850052 | 10.2.1.54 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid_N | 0.77 | 73.0 | 5.99e-01 | 100.0% | 78.3% |
| 2995054 | 10.2.1.54 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid_N | 0.74 | 69.0 | 5.59e-01 | 100.0% | 70.5% |
| 2995198 | 10.2.1.54 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid_N | 0.72 | 68.0 | 5.73e-01 | 100.0% | 77.9% |
| 1014044 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.71 | 65.0 | 5.70e-01 | 100.0% | 75.1% |
| 2502637 | 10.2.1.45 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Phage_Capsid_P3 | 0.71 | 64.0 | 5.10e-01 | 100.0% | 73.7% |
| 3580756 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.69 | 63.0 | 5.28e-01 | 100.0% | 79.0% |
| 5013999 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.68 | 62.0 | 5.56e-01 | 100.0% | 82.4% |
| 4927113 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 35.0 | 3.88e-01 | 90.9% | 81.1% |
| 3289145 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.54 | 32.0 | 3.77e-01 | 95.9% | 83.5% |
| 3805836 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.53 | 42.0 | 4.07e-01 | 92.6% | 76.3% |
| 5018126 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 34.0 | 3.64e-01 | 88.4% | 77.1% |
| 4991252 | 304.51.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related | 0.52 | 38.0 | 4.24e-01 | 93.4% | 100.0% |
| 3618358 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.51 | 37.0 | 3.46e-01 | 95.9% | 60.0% |
| 4989935 | 304.51.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related | 0.51 | 44.0 | 4.49e-01 | 95.9% | 98.3% |
| 3932049 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.51 | 43.0 | 3.81e-01 | 99.2% | 63.4% |
D4
medium
residues 219-276_417-545
Domain cluster:
rep: putative_capsid_protein_4__YP_003969808__Cafeteria_roenbergensis_virus_BV-PW1__693272__D326-494
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03340.20 best | Pox_Rif | 189.4 | 1.40e-55 | 69.5% | 24.0% |
| PF03340.20 | Pox_Rif | 69.5 | 2.90e-19 | 31.6% | 10.3% |