Back to structures

putative_serine_protease

Euk-Vir

Emiliania_huxleyi_virus_86

putative_serine_protease__YP_293904__Emiliania_huxleyi_virus_86__181082

Identity

Accession:
YP_293904 ↗
Protein ID:
putative_serine_protease
Kingdom:
euk

Quality

73.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 13-24_125-271
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00089.33 best Trypsin 47.5 2.90e-12 75.5% 47.7%
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2w5eA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.84 40.0 5.91e-01 71.1% 100.0%
1wczA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.79 56.0 6.59e-01 85.5% 100.0%
2zgcA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.78 56.0 6.26e-01 73.0% 100.0%
1azzA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.77 55.0 6.36e-01 73.0% 100.0%
1a1rA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.77 42.0 5.69e-01 73.0% 100.0%
3s9cA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.77 55.0 6.30e-01 73.0% 100.0%
2hlcA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.76 55.0 6.20e-01 74.2% 100.0%
3f1sB03 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.76 54.0 6.28e-01 76.7% 99.1%
5fahA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.76 55.0 6.34e-01 74.8% 100.0%
1gvzA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.75 54.0 6.12e-01 73.0% 100.0%
2rdlA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.75 54.0 6.23e-01 73.0% 100.0%
4ic5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.75 47.0 5.81e-01 76.1% 96.2%
5brrE01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.75 54.0 5.82e-01 73.0% 100.0%
1a7sA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.75 52.0 6.15e-01 73.0% 100.0%
5fcrA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.74 53.0 6.01e-01 73.0% 100.0%
1eq9A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.74 53.0 6.14e-01 73.0% 100.0%
3fzzA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.74 53.0 6.07e-01 73.0% 100.0%
2rceA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.74 48.0 5.84e-01 76.1% 98.1%
1buiA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.74 53.0 5.92e-01 73.0% 100.0%
3k6yA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.74 49.0 5.98e-01 76.1% 100.0%
1elvA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.74 53.0 5.95e-01 73.6% 100.0%
3dfjA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.74 53.0 5.72e-01 73.0% 100.0%
3beuA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.73 52.0 5.88e-01 73.0% 100.0%
3h7oB01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.73 51.0 5.98e-01 70.4% 100.0%
1autC01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.73 53.0 5.72e-01 73.6% 100.0%
1arbA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.71 52.0 5.92e-01 74.2% 99.2%
5pabH01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.71 51.0 5.64e-01 73.0% 100.0%
3nxpA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.70 49.0 4.67e-01 71.7% 73.1%
5eokA05 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.70 53.0 4.62e-01 78.6% 94.8%
2odpA03 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.67 54.0 5.34e-01 83.6% 100.0%
3otpA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.66 51.0 4.69e-01 80.5% 83.3%
1agjA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 44.0 4.85e-01 72.3% 85.1%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4350352 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.81 61.0 5.21e-01 78.0% 95.9%
3396195 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.79 61.0 5.30e-01 79.2% 100.0%
4545500 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.79 63.0 5.37e-01 81.1% 99.1%
3409561 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.79 60.0 5.19e-01 78.0% 100.0%
3397934 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.79 61.0 5.00e-01 79.9% 91.4%
1344807 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.79 51.0 4.43e-01 76.1% 46.0%
3410554 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.79 63.0 5.39e-01 83.0% 100.0%
3403181 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.78 62.0 5.32e-01 81.1% 94.9%
3475207 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.78 63.0 4.82e-01 83.0% 100.0%
3399384 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.78 60.0 5.04e-01 79.9% 94.5%
None 0.77 62.0 5.09e-01 83.0% 88.9%
3394182 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.77 63.0 5.43e-01 84.3% 98.7%
3388754 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.77 61.0 5.15e-01 81.8% 96.4%
4771581 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.77 57.0 5.91e-01 76.1% 79.6%
3392280 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.77 59.0 4.84e-01 79.2% 93.0%
3896593 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.77 57.0 6.15e-01 83.0% 87.8%
3414189 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.77 59.0 4.79e-01 79.2% 91.6%
3870111 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.76 59.0 4.99e-01 79.9% 73.2%
3856305 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.76 60.0 5.13e-01 80.5% 96.2%
3485102 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.76 56.0 5.85e-01 75.5% 82.1%
3406252 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.76 60.0 5.03e-01 81.8% 96.0%
3492991 1.1.5.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.76 55.0 6.05e-01 75.5% 88.8%
3759042 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.76 59.0 4.72e-01 80.5% 92.4%
3913731 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.76 61.0 4.93e-01 83.0% 89.8%
3855145 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.75 57.0 4.65e-01 77.4% 69.6%
3394133 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.75 63.0 5.54e-01 87.4% 99.6%
3843200 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.75 61.0 5.11e-01 84.9% 91.5%
3407934 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.75 59.0 4.98e-01 81.8% 96.5%
3490463 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.74 59.0 5.02e-01 81.8% 99.2%
3391188 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.74 58.0 4.99e-01 81.1% 100.0%
3546992 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.74 61.0 4.96e-01 84.9% 90.7%
3408736 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.73 57.0 4.73e-01 80.5% 86.4%
3407037 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.73 62.0 5.31e-01 87.4% 98.3%
4557948 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.73 62.0 5.09e-01 88.1% 94.3%
3412320 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.73 55.0 4.39e-01 78.0% 92.6%
3392873 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.73 61.0 5.36e-01 87.4% 99.1%
3776853 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.71 58.0 4.78e-01 83.6% 73.1%
3760665 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.71 58.0 4.82e-01 84.9% 91.9%
3388510 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.71 60.0 4.98e-01 88.1% 93.5%
3552749 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.71 60.0 5.15e-01 87.4% 97.9%
3516834 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.70 54.0 4.35e-01 79.9% 94.6%
3406163 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.70 54.0 4.65e-01 79.9% 96.7%
3397483 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.70 58.0 4.68e-01 86.2% 88.2%
4194689 1.1.5.57 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Mycop_pep_DUF31 0.69 59.0 4.37e-01 89.9% 97.7%
1290831 1.1.17.9 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › PF30586 0.69 61.0 4.99e-01 91.2% 96.2%
3597372 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.69 56.0 4.48e-01 83.6% 69.5%
3500523 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.69 58.0 4.69e-01 87.4% 94.2%
3506893 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.69 53.0 4.26e-01 79.9% 94.6%
3893666 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.67 56.0 4.69e-01 87.4% 90.6%
3258480 1.1.17.3 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.67 56.0 4.45e-01 87.4% 87.0%
5016520 1.1.17.3 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.67 55.0 4.76e-01 86.2% 91.1%
4052310 1.1.5.57 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Mycop_pep_DUF31 0.66 56.0 4.21e-01 89.3% 99.7%
3727317 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.66 51.0 4.06e-01 79.9% 97.7%
4548024 1.1.17.27 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Mycop_pep_DUF31 0.65 57.0 4.06e-01 91.2% 84.1%
3193247 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.65 51.0 4.29e-01 80.5% 61.1%
3421481 1.1.17.3 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.64 52.0 4.30e-01 84.3% 76.3%
4683578 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.64 53.0 4.68e-01 86.2% 84.4%
398505 1.1.17.3 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.64 50.0 4.36e-01 80.5% 75.0%
3659932 1.1.17.3 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.64 51.0 4.32e-01 83.0% 75.2%
3948218 1.1.17.3 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.64 51.0 4.36e-01 83.0% 70.6%
3647453 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.62 50.0 4.16e-01 83.0% 79.2%
3280955 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.62 50.0 4.37e-01 83.0% 82.2%
3276425 1.1.17.3 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.61 52.0 4.19e-01 89.9% 82.3%
3186280 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.60 50.0 4.45e-01 86.2% 80.0%
4022015 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.58 48.0 4.10e-01 86.8% 74.7%
3783835 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.53 49.0 4.04e-01 96.9% 83.4%
4943576 4.23.1.0 beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like 0.52 30.0 3.32e-01 79.9% 69.6%
5035282 4.23.1.2 beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.52 30.0 3.33e-01 78.6% 70.4%
D2 medium residues 25-124
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00089.33 best Trypsin 64.7 1.60e-17 98.0% 41.4%