putative_structural_gag_protein

Euk-Vir

Trichoderma_atroviride_mycovirus

putative_structural_gag_protein__YP_009342054__Trichoderma_atroviride_mycovirus__1934322

Identity

47.5 mean pLDDT

Singleton — not in a non-trivial cluster

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 847-978

PDB

D2 medium residues 279-336

PDB

D3 medium residues 363-431

PDB

D4 medium residues 432-453_600-664

PDB

Domain cluster: representative

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4gtnA01	1.20.970.10	Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C	0.69	42.0	4.50e-01	88.5%	71.6%
2pbiA02	1.10.1240.60	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 ›	0.56	37.0	3.60e-01	85.1%	59.4%
3qo8A01	1.10.287.40	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain	0.54	45.0	4.30e-01	95.4%	97.2%
3c2bA02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.52	45.0	3.88e-01	100.0%	65.3%
2ic6A00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.50	31.0	3.37e-01	72.4%	74.6%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3189905	180.1.1.1 ↗	alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2	0.69	50.0	3.61e-01	77.0%	37.6%
4939332	604.9.1.0 ↗	alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20	0.54	37.0	3.64e-01	70.1%	91.6%
5075066	633.21.1.0 ↗	alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107	0.53	40.0	3.77e-01	93.1%	64.5%
4376172	101.1.2.40 ↗	alpha arrays › HTH › HTH › winged helix domain › CPSase_L_D3	0.53	39.0	3.24e-01	95.4%	43.1%
3492458	7022.1.1.0 ↗	alpha bundles › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein	0.52	40.0	3.12e-01	83.9%	46.5%
3772175	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.50	39.0	2.72e-01	86.2%	36.0%

D5 medium residues 454-599_665-701

PDB

Domain cluster: rep: hypothetical_protein__YP_009115497__Botrytis_cinerea_RNA_virus_1__1568973__D417-471_487-617

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3eywB02	3.40.50.360	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain	0.55	28.0	2.91e-01	70.5%	48.3%
3u0hA00	3.20.20.150	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes	0.52	36.0	3.18e-01	71.0%	99.3%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3940699	2002.1.1.189 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PRMT5_TIM	0.54	38.0	3.23e-01	71.6%	97.0%
3727285	2004.1.1.23 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom	0.50	26.0	2.28e-01	72.1%	29.5%

D6 medium residues 702-818

PDB