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putative_structural_protein
Euk-VirChaetoceros_species_RNA_virus_02
putative_structural_protein__YP_010084315__Chaetoceros_species_RNA_virus_02__1045800
Identity
- Accession:
- YP_010084315 ↗
- Protein ID:
- putative_structural_protein
- Kingdom:
- euk
Quality
67.7
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Pisoniviricetes›
Picornavirales›
Marnaviridae›
Sogarnavirus›
Chaetoceros_species_RNA_virus_02
TaxID: 1045800
Cluster
View cluster (173 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 560-705
D2
medium
residues 1-117
D3
medium
residues 176-285_305-346_381-412_447-477_506-548
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF11492.15 best | Dicistro_VP4 | 45.2 | 1.00e-11 | 15.5% | 70.2% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3napB00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 42.0 | 4.31e-01 | 72.5% | 99.6% |
| 6sk6A00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 41.0 | 4.07e-01 | 76.4% | 97.1% |
| 1cov100 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 41.0 | 4.06e-01 | 76.7% | 95.9% |
| 1bev100 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 42.0 | 4.17e-01 | 79.8% | 94.8% |
| 4nzdB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 21.0 | 3.20e-01 | 86.4% | 85.3% |
| 4aw7A01 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.52 | 24.0 | 3.47e-01 | 83.7% | 94.1% |
| 8b38A01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 35.0 | 3.79e-01 | 70.5% | 100.0% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2099184 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.68 | 54.0 | 5.13e-01 | 81.0% | 97.0% |
| 140027 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.58 | 42.0 | 4.31e-01 | 72.5% | 99.6% |
| 1866791 | 10.2.1.69 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv_5 | 0.55 | 42.0 | 4.21e-01 | 77.9% | 97.3% |
| 2526957 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.55 | 43.0 | 4.15e-01 | 80.2% | 98.2% |
| 1204 | 10.2.1.69 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv_5 | 0.54 | 43.0 | 4.17e-01 | 81.4% | 95.4% |
| 2884840 | 10.2.1.50 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.54 | 42.0 | 4.04e-01 | 79.5% | 91.5% |
| 1713715 | 10.2.1.69 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv_5 | 0.53 | 43.0 | 4.15e-01 | 83.3% | 91.6% |
| 148379 | 10.2.1.69 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv_5 | 0.52 | 42.0 | 4.01e-01 | 83.3% | 90.9% |
| 4444390 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.51 | 20.0 | 3.03e-01 | 81.8% | 87.4% |
| 3027185 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 20.0 | 3.09e-01 | 92.2% | 89.7% |
| 3846497 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.50 | 21.0 | 3.10e-01 | 93.8% | 91.0% |
D4
medium
residues 286-304_347-380_413-446