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putative_transcription_initiation_factor_TFIIB
Euk-VirLausannevirus
putative_transcription_initiation_factor_TFIIB__YP_004347172__Lausannevirus__999883
Identity
- Accession:
- YP_004347172 ↗
- Protein ID:
- putative_transcription_initiation_factor_TFIIB
- Kingdom:
- euk
Quality
72.5
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Pimascovirales›
Marseilleviridae›
Losannavirus›
Lausannevirus
TaxID: 999883
Cluster
View cluster (11 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 75-163
Domain cluster:
rep: transcription_initiation_factor_TFIIB__YP_009001323__Pithovirus_sibericum__1450746__D11-90
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7jv7B01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.79 | 73.0 | 6.09e-01 | 100.0% | 66.4% |
| 4rocA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.79 | 72.0 | 6.86e-01 | 100.0% | 88.3% |
| 6z4xA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.77 | 67.0 | 5.57e-01 | 100.0% | 54.8% |
| 1aisB02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.77 | 68.0 | 6.75e-01 | 100.0% | 91.5% |
| 1c9bA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.77 | 68.0 | 6.67e-01 | 100.0% | 88.7% |
| 2ivxB01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.77 | 70.0 | 5.96e-01 | 100.0% | 72.1% |
| 2i53A01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.76 | 69.0 | 5.85e-01 | 100.0% | 67.1% |
| 3h4cA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.76 | 69.0 | 6.78e-01 | 100.0% | 93.8% |
| 1c9bA02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.76 | 66.0 | 6.28e-01 | 100.0% | 81.1% |
| 4bbrM00 | 1.10.472.170 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › | 0.75 | 66.0 | 5.11e-01 | 100.0% | 44.6% |
| 1zp2A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.75 | 68.0 | 6.27e-01 | 100.0% | 86.6% |
| 5xs2B02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.73 | 66.0 | 5.78e-01 | 100.0% | 78.0% |
| 2pmiB00 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.71 | 63.0 | 4.80e-01 | 100.0% | 57.3% |
| 3umbA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.69 | 51.0 | 5.44e-01 | 77.5% | 97.5% |
| 3h4cA02 | 1.10.472.110 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › | 0.69 | 62.0 | 5.82e-01 | 100.0% | 83.6% |
| 3m03B00 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.68 | 59.0 | 5.86e-01 | 98.9% | 90.5% |
| 3vkgA08 | 1.10.472.130 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Dynein motor, AAA2 domain, small subdomain | 0.65 | 57.0 | 4.74e-01 | 97.8% | 82.5% |
| 2lyiA01 | 1.10.274.60 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain | 0.64 | 49.0 | 4.23e-01 | 84.3% | 71.6% |
| 3s6jE02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.64 | 39.0 | 4.34e-01 | 79.8% | 79.7% |
| 2qq8A02 | 1.10.8.270 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › putative rabgap domain of human tbc1 domain family member 14 like domains | 0.62 | 45.0 | 4.47e-01 | 98.9% | 71.9% |
| 1n81A00 | 1.10.3030.10 | Mainly Alpha › Orthogonal Bundle › Gametocyte protein Pfg27 › Gametocyte protein Pfg27 | 0.61 | 49.0 | 3.97e-01 | 89.9% | 92.5% |
| 3uitA02 | 1.20.1270.460 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.61 | 46.0 | 4.13e-01 | 82.0% | 75.4% |
| 3eoqB02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.60 | 43.0 | 3.48e-01 | 77.5% | 87.4% |
| 2e87A01 | 1.20.120.1190 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.59 | 42.0 | 3.52e-01 | 75.3% | 65.0% |
| 2v79A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 48.0 | 4.42e-01 | 89.9% | 84.3% |
| 2o35A00 | 1.10.3340.10 | Mainly Alpha › Orthogonal Bundle › SMc04008-like fold › SMc04008-like | 0.57 | 40.0 | 4.26e-01 | 86.5% | 81.0% |
| 1h99A02 | 1.10.1790.10 | Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain | 0.57 | 46.0 | 4.36e-01 | 86.5% | 93.4% |
| 2ahoB02 | 1.10.150.190 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 | 0.55 | 43.0 | 4.29e-01 | 91.0% | 80.2% |
| 5lnkJ01 | 1.20.120.1200 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ | 0.55 | 38.0 | 3.07e-01 | 71.9% | 37.3% |
| 2gmyD00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.54 | 39.0 | 3.38e-01 | 77.5% | 63.4% |
| 2yayA02 | 1.20.1670.10 | Mainly Alpha › Up-down Bundle › all-alpha NTP pyrophosphatase › Type II deoxyuridine triphosphatase | 0.54 | 35.0 | 3.15e-01 | 96.6% | 44.4% |
| 3bjdA02 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.54 | 46.0 | 3.58e-01 | 100.0% | 70.0% |
| 3t57A02 | 1.20.1180.10 | Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain | 0.53 | 37.0 | 3.94e-01 | 71.9% | 97.3% |
| 1aluA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.51 | 43.0 | 3.60e-01 | 95.5% | 70.7% |
| 1hcyA02 | 1.10.1280.10 | Mainly Alpha › Orthogonal Bundle › di-copper center containing domain from catechol oxidase › Di-copper center containing domain from catechol oxidase | 0.50 | 39.0 | 2.99e-01 | 86.5% | 61.4% |
| 6zhiB02 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.50 | 34.0 | 3.53e-01 | 78.7% | 74.7% |
ECOD (50)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5000678 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.82 | 71.0 | 6.84e-01 | 100.0% | 82.0% |
| 3677431 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.80 | 73.0 | 5.54e-01 | 100.0% | 52.5% |
| 3816829 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.79 | 72.0 | 5.85e-01 | 100.0% | 56.2% |
| 3644929 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.78 | 71.0 | 5.01e-01 | 100.0% | 42.6% |
| 5025138 | 101.1.10.80 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Zn_Ribbon_TF | 0.78 | 70.0 | 5.30e-01 | 100.0% | 43.0% |
| 4030134 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.78 | 66.0 | 5.79e-01 | 100.0% | 61.5% |
| 5053417 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.78 | 71.0 | 5.91e-01 | 100.0% | 58.7% |
| 4978149 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.78 | 69.0 | 6.81e-01 | 100.0% | 90.5% |
| 3736572 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.77 | 70.0 | 6.05e-01 | 100.0% | 65.2% |
| 4969273 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.77 | 65.0 | 6.30e-01 | 100.0% | 82.7% |
| 4947168 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.77 | 68.0 | 6.80e-01 | 100.0% | 94.4% |
| 4955900 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.77 | 68.0 | 6.86e-01 | 97.8% | 95.6% |
| 4029938 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.77 | 71.0 | 5.87e-01 | 100.0% | 60.7% |
| 3830022 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.76 | 66.0 | 6.13e-01 | 97.8% | 75.5% |
| 3668562 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.76 | 70.0 | 5.65e-01 | 100.0% | 63.6% |
| 3679788 | 101.1.20.5 ↗ | alpha arrays › HTH › HTH › Sigma54 core-binding domain › TFIIB | 0.76 | 70.0 | 5.49e-01 | 100.0% | 56.1% |
| 3639001 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.76 | 70.0 | 5.96e-01 | 100.0% | 65.0% |
| 3374895 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.76 | 70.0 | 6.03e-01 | 100.0% | 66.7% |
| 4947863 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.76 | 68.0 | 6.87e-01 | 100.0% | 96.7% |
| 5064400 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.76 | 68.0 | 6.67e-01 | 100.0% | 91.6% |
| 3374591 | 101.1.10.34 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N+CycT2-like_C | 0.76 | 69.0 | 4.76e-01 | 100.0% | 37.6% |
| 3269341 | 101.1.10.22 ↗ | alpha arrays › HTH › HTH › Cyclin-like › ORC6 | 0.76 | 65.0 | 6.56e-01 | 100.0% | 93.3% |
| 4999090 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.76 | 70.0 | 6.10e-01 | 100.0% | 68.5% |
| 3627307 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.76 | 69.0 | 5.42e-01 | 100.0% | 50.6% |
| 3185978 | 101.1.10.14 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C_2 | 0.76 | 66.0 | 4.57e-01 | 100.0% | 29.3% |
| 3828317 | 101.1.10.18 ↗ | alpha arrays › HTH › HTH › Cyclin-like › BRF2-like_C_cyclin_rpt | 0.76 | 69.0 | 5.76e-01 | 100.0% | 60.0% |
| 3718232 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.75 | 60.0 | 5.87e-01 | 83.1% | 86.3% |
| 4991128 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.75 | 68.0 | 6.72e-01 | 100.0% | 95.8% |
| 4944102 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.75 | 68.0 | 6.82e-01 | 100.0% | 97.8% |
| 4996071 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.75 | 68.0 | 6.79e-01 | 100.0% | 97.8% |
| 4965872 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.75 | 63.0 | 6.04e-01 | 100.0% | 81.0% |
| 4061511 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.74 | 65.0 | 6.44e-01 | 100.0% | 91.6% |
| 5078302 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.74 | 63.0 | 6.12e-01 | 100.0% | 84.0% |
| 3923604 | 101.1.10.14 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C_2 | 0.74 | 66.0 | 4.57e-01 | 100.0% | 30.2% |
| 3510864 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.73 | 65.0 | 5.21e-01 | 100.0% | 51.7% |
| 3634574 | 101.1.10.2 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N,Cyclin_C_2 | 0.73 | 65.0 | 4.68e-01 | 100.0% | 35.3% |
| 3296350 | 101.1.10.19 ↗ | alpha arrays › HTH › HTH › Cyclin-like › ORC6_2nd | 0.72 | 64.0 | 6.20e-01 | 98.9% | 94.0% |
| 3695966 | 101.1.10.9 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin | 0.72 | 65.0 | 4.93e-01 | 100.0% | 65.9% |
| 5042406 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.72 | 64.0 | 6.34e-01 | 98.9% | 97.9% |
| 3269331 | 101.1.10.19 ↗ | alpha arrays › HTH › HTH › Cyclin-like › ORC6_2nd | 0.71 | 65.0 | 5.42e-01 | 100.0% | 62.0% |
| 4976309 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.68 | 59.0 | 5.59e-01 | 100.0% | 82.9% |
| 4976369 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.68 | 59.0 | 5.48e-01 | 100.0% | 76.5% |
| 5072566 | 604.4.1.0 ↗ | alpha bundles › Spectrin repeat-like › Alpha-hemoglobin stabilizing protein AHSP › Alpha-hemoglobin stabilizing protein AHSP | 0.64 | 38.0 | 4.28e-01 | 78.7% | 77.1% |
| 3573570 | 604.33.1.0 ↗ | alpha bundles › Spectrin repeat-like › Repulsive guidance molecule (RGM) N-terminal domain › Repulsive guidance molecule (RGM) N-terminal domain | 0.58 | 43.0 | 4.28e-01 | 78.7% | 93.7% |
| 3180584 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.58 | 43.0 | 4.33e-01 | 77.5% | 80.0% |
| 3050 | 102.3.1.1 ↗ | alpha arrays › HhH/H2TH › eIF2alpha middle domain › eIF2alpha middle domain › EIF_2_alpha | 0.56 | 43.0 | 4.29e-01 | 91.0% | 79.1% |
| 5031241 | 192.5.1.0 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat | 0.54 | 43.0 | 4.53e-01 | 84.3% | 100.0% |
| 4826576 | 150.1.1.5 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › DUF305 | 0.53 | 39.0 | 3.98e-01 | 77.5% | 87.1% |
| 4033983 | 132.1.1.1 ↗ | alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding | 0.53 | 37.0 | 3.81e-01 | 76.4% | 76.5% |
| 4937420 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.51 | 40.0 | 2.56e-01 | 86.5% | 30.7% |
D2
high
residues 173-264