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putative_transcriptional_elongation_factor

Euk-Vir

Flamingopox_virus_FGPVKD09

putative_transcriptional_elongation_factor__YP_009447997__Flamingopox_virus_FGPVKD09__2059380

Identity

Accession:
YP_009447997 ↗
Protein ID:
putative_transcriptional_elongation_factor
Kingdom:
euk

Quality

92.4 mean pLDDT

Cluster

View cluster (28 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-70_206-223
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05796.19 best Chordopox_G2 91.3 8.80e-26 100.0% 35.4%
D2 high residues 88-180
PDB
Domain cluster: rep: CPXV090_protein__NP_619877__Cowpox_virus__10243__D88-174
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05796.19 best Chordopox_G2 79.0 5.20e-22 100.0% 40.5%
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5n2iD00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.67 50.0 3.76e-01 78.5% 55.4%
2uyyA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.62 46.0 3.85e-01 79.6% 64.5%
5ce6A01 3.40.350.10 Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain 0.61 49.0 4.11e-01 88.2% 70.7%
3snoA02 3.20.10.10 Alpha Beta › Alpha-Beta Barrel › D-amino Acid Aminotransferase; Chain A, domain 2 › D-amino Acid Aminotransferase, subunit A, domain 2 0.61 50.0 4.55e-01 89.2% 91.1%
6juyC01 3.75.10.10 Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A 0.60 48.0 3.54e-01 88.2% 77.9%
4dw8A02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.59 46.0 4.42e-01 82.8% 80.2%
3daoA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.59 45.0 4.32e-01 82.8% 77.1%
1ez0A02 3.40.309.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 2 › Aldehyde Dehydrogenase; Chain A, domain 2 0.58 45.0 3.65e-01 84.9% 92.4%
1nf2A02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.57 44.0 4.22e-01 81.7% 78.3%
2wtbA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 45.0 3.73e-01 91.4% 63.3%
2j3lA03 3.90.960.10 Alpha Beta › Alpha-Beta Complex › YbaK protein › YbaK/aminoacyl-tRNA synthetase-associated domain 0.55 41.0 3.60e-01 80.6% 72.1%
1e3mB02 3.30.420.110 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain 0.54 38.0 3.46e-01 75.3% 55.0%
2wsiA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.54 40.0 2.90e-01 79.6% 78.6%
1wu7A03 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.53 37.0 3.70e-01 72.0% 84.5%
3lzdA03 3.40.50.11860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Diphthamide synthesis DPH1/DPH2 domain 3 0.53 44.0 4.33e-01 94.6% 93.1%
3r4cA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.52 41.0 4.05e-01 86.0% 82.2%
4gbjC01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 43.0 3.67e-01 91.4% 61.8%
1nioA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.52 46.0 3.86e-01 98.9% 91.4%
5jr6A01 3.40.350.10 Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain 0.51 40.0 3.51e-01 88.2% 83.6%
1d0nA02 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.51 42.0 3.97e-01 88.2% 90.0%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5015426 2003.1.1.46 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › F420_oxidored 0.67 50.0 3.75e-01 78.5% 59.1%
4947138 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.64 47.0 3.62e-01 78.5% 58.5%
3642713 2003.1.5.10 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Fibrillarin 0.62 49.0 4.09e-01 83.9% 60.6%
4444298 3012.1.1.4 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Hydrolase_3 0.60 48.0 4.63e-01 84.9% 83.8%
1179503 4045.1.1.1 ↗ a+b two layers › barrel domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › barrel domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › barrel domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › Aminotran_4 0.58 48.0 4.67e-01 90.3% 92.4%
3265906 3012.1.1.4 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Hydrolase_3 0.57 44.0 4.13e-01 82.8% 81.7%
3594539 3012.1.1.0 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.56 45.0 4.32e-01 86.0% 82.9%
4044009 3012.1.1.0 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.56 43.0 4.08e-01 82.8% 80.9%
3716583 2006.1.1.37 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › S6PP+Hydrolase_3 0.55 42.0 3.05e-01 83.9% 28.5%
4023991 2484.3.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Creatinase/prolidase N-terminal domain › Creatinase/prolidase N-terminal domain › Creatinase_N 0.52 42.0 3.47e-01 89.2% 76.7%
3548494 904.1.1.14 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › SNAPC3 0.52 46.0 3.84e-01 100.0% 81.7%
4119933 247.1.1.1 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.51 43.0 3.21e-01 94.6% 77.7%
3998575 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.51 38.0 3.83e-01 81.7% 96.8%
3964852 2484.3.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Creatinase/prolidase N-terminal domain › Creatinase/prolidase N-terminal domain › Creatinase_N 0.51 40.0 3.56e-01 89.2% 78.6%