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putative_ubiquitin-conjugating_enzyme_E2
Euk-VirCafeteria_roenbergensis_virus_BV-PW1
putative_ubiquitin-conjugating_enzyme_E2__YP_003969830__Cafeteria_roenbergensis_virus_BV-PW1__693272
Identity
- Accession:
- YP_003969830 ↗
- Protein ID:
- putative_ubiquitin-conjugating_enzyme_E2
- Kingdom:
- euk
Quality
39.6
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Imitervirales›
Mimiviridae›
Rheavirus›
Cafeteria_roenbergensis_virus_BV-PW1
TaxID: 693272
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 23-94
D2
medium
residues 347-452
D3
medium
residues 505-612
D4
medium
residues 613-729
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3cegA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.83 | 77.0 | 5.64e-01 | 100.0% | 44.2% |
| 1ho8A02 | 1.25.40.150 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › V-type ATPase, subunit H, C-terminal domain | 0.64 | 44.0 | 4.52e-01 | 85.5% | 73.2% |
| 3l1nA02 | 1.20.1280.140 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.58 | 41.0 | 4.65e-01 | 73.5% | 100.0% |
| 5ux1D00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.57 | 41.0 | 3.50e-01 | 75.2% | 67.5% |
| 2l3lA01 | 1.20.58.1250 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tubulin Binding Cofactor C, N-terminal domain | 0.57 | 40.0 | 4.14e-01 | 70.9% | 81.1% |
| 1ng6A01 | 1.10.1510.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Protein Yqey; Chain: A; domain1 › Uncharacterised protein YqeY/AIM41, N-terminal domain | 0.56 | 35.0 | 3.85e-01 | 70.1% | 79.1% |
| 1sz9C00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.54 | 47.0 | 4.44e-01 | 93.2% | 85.7% |
| 2y8nA00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.53 | 44.0 | 2.69e-01 | 91.5% | 70.7% |
| 3eupB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.53 | 41.0 | 3.52e-01 | 83.8% | 76.5% |
| 2f3oA00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.52 | 44.0 | 2.71e-01 | 93.2% | 68.7% |
| 4akgA04 | 1.20.58.1120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dynein motor heavy chain, linker domain, subdomain 4 | 0.50 | 35.0 | 3.27e-01 | 86.3% | 54.5% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3940734 | 216.1.1.1 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con | 0.82 | 77.0 | 5.47e-01 | 100.0% | 44.4% |
| 3628012 | 216.1.1.1 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con | 0.82 | 77.0 | 5.51e-01 | 100.0% | 45.8% |
| 3659245 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.81 | 75.0 | 6.18e-01 | 100.0% | 70.5% |
| 3475465 | 216.1.1.1 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con | 0.79 | 73.0 | 5.45e-01 | 100.0% | 55.4% |
| 3937243 | 604.1.1.139 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF7799 | 0.69 | 51.0 | 4.76e-01 | 76.9% | 89.7% |
| 3493827 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.63 | 45.0 | 4.43e-01 | 75.2% | 82.3% |
| 4649278 | 109.4.1.1375 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_SYVN1_N | 0.62 | 50.0 | 3.82e-01 | 85.5% | 53.6% |
| 3608568 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.62 | 57.0 | 4.18e-01 | 99.1% | 71.2% |
| 3699725 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 50.0 | 4.56e-01 | 90.6% | 89.7% |
| 4112536 | 109.4.1.1759 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MBOAT | 0.57 | 39.0 | 2.97e-01 | 84.6% | 29.8% |
| 3258505 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.56 | 45.0 | 4.10e-01 | 85.5% | 65.2% |
| 3906208 | 604.7.1.12 ↗ | alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA_PH | 0.56 | 39.0 | 3.63e-01 | 70.9% | 95.2% |
| 4881792 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.54 | 42.0 | 3.99e-01 | 88.9% | 69.0% |
| 3260074 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.52 | 41.0 | 3.60e-01 | 87.2% | 99.5% |