Back to structures

putative_ubiquitin_carboxyl-terminal_hydrolase

Euk-Vir

Cafeteria_roenbergensis_virus_BV-PW1

putative_ubiquitin_carboxyl-terminal_hydrolase__YP_003970019__Cafeteria_roenbergensis_virus_BV-PW1__693272

Identity

Accession:
YP_003970019 ↗
Protein ID:
putative_ubiquitin_carboxyl-terminal_hydrolase
Kingdom:
euk

Quality

65.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-85
PDB
D2 medium residues 86-169
PDB
D3 medium residues 170-262
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00443.36 best UCH 65.0 1.10e-17 96.8% 41.7%
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6heiA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.84 80.0 5.25e-01 100.0% 34.8%
5cvmA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.84 80.0 5.34e-01 100.0% 36.7%
7w3rB01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.84 79.0 5.28e-01 100.0% 44.2%
5chtB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.83 79.0 5.30e-01 100.0% 34.0%
4fk5A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.82 77.0 5.19e-01 100.0% 33.6%
4m0wA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.81 58.0 5.04e-01 100.0% 50.4%
3i3tA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.81 76.0 5.15e-01 100.0% 32.3%
5gviA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.81 76.0 5.10e-01 100.0% 37.8%
3ihpA03 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.81 77.0 5.03e-01 100.0% 31.9%
2gfoA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.80 75.0 4.96e-01 100.0% 31.0%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.76 55.0 4.74e-01 100.0% 50.4%
3kf3A02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.61 55.0 4.46e-01 100.0% 98.3%
4mxtA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.61 45.0 3.61e-01 78.5% 85.6%
2cwsA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 49.0 3.71e-01 94.6% 96.9%
4m00A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 49.0 3.73e-01 100.0% 79.8%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.55 47.0 3.88e-01 100.0% 54.3%
5xnrA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 48.0 3.60e-01 100.0% 83.5%
5z5dA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 48.0 3.79e-01 100.0% 99.0%
1o70A02 2.30.180.10 Mainly Beta › Roll › FAS1 domain › FAS1 domain 0.54 37.0 3.10e-01 71.0% 41.7%
2r1bA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 46.0 3.70e-01 100.0% 75.8%
3b5qA00 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.53 45.0 2.91e-01 95.7% 79.7%
1vkdA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 38.0 2.71e-01 77.4% 92.6%
1pz7A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 46.0 3.71e-01 100.0% 79.3%
1okqA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 45.0 3.73e-01 100.0% 79.4%
1mveA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 45.0 3.38e-01 100.0% 63.2%
3mh9A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.51 44.0 3.44e-01 97.8% 84.4%
ECOD (90)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3606753 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.85 80.0 5.16e-01 100.0% 41.4%
3716949 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.85 80.0 5.28e-01 100.0% 37.1%
3600457 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.84 79.0 5.20e-01 100.0% 41.2%
3800852 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.84 80.0 5.11e-01 100.0% 31.5%
3490907 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.84 80.0 5.11e-01 100.0% 31.2%
3586488 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.84 79.0 5.14e-01 100.0% 41.4%
3257853 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.84 79.0 5.38e-01 100.0% 36.6%
3426676 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.84 79.0 5.15e-01 100.0% 31.8%
3719044 219.1.1.112 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH, UCH_1 0.84 79.0 5.14e-01 100.0% 36.3%
3592731 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.84 79.0 5.08e-01 100.0% 42.7%
3358186 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.83 80.0 5.16e-01 100.0% 34.7%
3382767 219.1.1.112 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH, UCH_1 0.83 80.0 5.23e-01 100.0% 36.7%
3501377 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.83 79.0 6.17e-01 100.0% 69.3%
3418449 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.83 79.0 4.92e-01 100.0% 28.7%
3652683 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.83 79.0 5.03e-01 100.0% 32.5%
3739929 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.83 79.0 5.25e-01 100.0% 30.5%
3494259 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.83 78.0 4.97e-01 100.0% 42.3%
3737025 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.83 78.0 5.09e-01 100.0% 31.0%
3912023 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.83 78.0 5.25e-01 100.0% 37.1%
3271037 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.83 79.0 4.90e-01 100.0% 44.9%
3783065 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.83 79.0 5.08e-01 100.0% 28.8%
3636498 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.83 79.0 5.13e-01 100.0% 31.3%
3710203 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.83 78.0 4.88e-01 100.0% 38.2%
3743825 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.83 79.0 5.25e-01 100.0% 32.3%
3750815 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.83 79.0 5.02e-01 100.0% 31.1%
3694580 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.83 78.0 5.00e-01 100.0% 32.4%
3932677 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.83 78.0 6.51e-01 100.0% 65.1%
3717786 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.83 78.0 4.78e-01 100.0% 34.8%
4017540 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.83 78.0 5.17e-01 100.0% 34.8%
3255440 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.82 78.0 5.07e-01 100.0% 40.9%
3608005 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.82 78.0 5.12e-01 100.0% 28.7%
3734153 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.82 77.0 5.18e-01 100.0% 34.8%
3704202 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.82 73.0 5.98e-01 94.6% 100.0%
3692594 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.82 77.0 4.89e-01 100.0% 30.1%
4101918 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.82 77.0 4.97e-01 100.0% 31.5%
4875314 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.82 77.0 6.99e-01 100.0% 81.7%
3487286 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.82 77.0 5.04e-01 100.0% 30.2%
3274867 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.82 77.0 5.27e-01 100.0% 35.1%
3404995 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.82 77.0 5.02e-01 100.0% 29.9%
3178434 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.81 77.0 5.02e-01 100.0% 28.9%
3408112 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.81 77.0 5.10e-01 100.0% 34.2%
4003825 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.81 77.0 4.88e-01 100.0% 29.9%
4369043 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.81 77.0 5.03e-01 100.0% 30.8%
3864688 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.81 77.0 5.03e-01 100.0% 30.4%
4029745 219.1.1.112 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH, UCH_1 0.81 77.0 5.03e-01 100.0% 34.1%
3788099 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.81 77.0 4.88e-01 100.0% 32.0%
3237895 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.81 76.0 5.06e-01 100.0% 30.9%
4677137 219.1.1.50 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH_1 0.81 76.0 4.57e-01 100.0% 22.0%
4011568 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.81 76.0 5.03e-01 100.0% 31.9%
3704833 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.81 76.0 5.12e-01 100.0% 31.0%
3723169 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.81 76.0 5.00e-01 100.0% 31.0%
3529004 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.81 76.0 5.04e-01 100.0% 30.9%
3890729 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.81 76.0 4.86e-01 100.0% 32.2%
3800929 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.81 77.0 4.82e-01 100.0% 44.9%
3240167 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.81 76.0 5.13e-01 100.0% 35.3%
3814705 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.81 76.0 4.96e-01 100.0% 30.0%
3913807 219.1.1.112 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH, UCH_1 0.81 76.0 5.19e-01 100.0% 34.5%
3272442 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.81 76.0 5.04e-01 100.0% 31.7%
4024708 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.81 76.0 4.88e-01 100.0% 31.2%
3510146 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.81 76.0 4.92e-01 100.0% 29.7%
4155213 219.1.1.50 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH_1 0.80 75.0 4.67e-01 100.0% 23.6%
3469952 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.80 76.0 4.97e-01 100.0% 30.6%
4208849 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.80 76.0 6.33e-01 100.0% 73.6%
3614286 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.80 75.0 4.97e-01 100.0% 31.8%
3991880 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.80 75.0 4.87e-01 100.0% 29.8%
3485620 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.80 75.0 4.92e-01 100.0% 35.9%
3787662 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.80 75.0 4.78e-01 100.0% 28.5%
3303851 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.80 75.0 4.98e-01 100.0% 33.3%
3993647 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.80 75.0 5.03e-01 100.0% 33.3%
3470395 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.80 75.0 5.44e-01 100.0% 56.1%
3911651 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.80 75.0 4.90e-01 100.0% 29.3%
3401777 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.79 74.0 4.83e-01 100.0% 29.9%
3177128 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.79 75.0 4.76e-01 100.0% 26.8%
3823449 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.79 74.0 5.09e-01 100.0% 36.2%
3247609 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.79 74.0 4.86e-01 100.0% 30.3%
4012827 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.79 73.0 4.61e-01 98.9% 23.0%
4023904 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.78 73.0 4.66e-01 100.0% 26.3%
3940760 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.78 74.0 4.94e-01 100.0% 52.8%
2410435 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.77 71.0 4.63e-01 100.0% 28.8%
3237575 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.76 71.0 4.92e-01 100.0% 33.6%
3244743 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.73 69.0 5.74e-01 100.0% 62.0%
3230955 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.72 67.0 4.77e-01 100.0% 61.6%
4467867 3784.1.1.0 a+b two layers › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related 0.67 49.0 4.23e-01 76.3% 66.9%
3762030 219.1.1.14 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Josephin 0.67 56.0 5.03e-01 95.7% 66.4%
4533388 219.1.1.122 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PF28648 0.66 57.0 4.28e-01 100.0% 38.7%
3611079 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.61 55.0 4.13e-01 100.0% 62.6%
3890410 11.2.1.29 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF4550 0.61 42.0 3.48e-01 71.0% 80.6%
4965206 4221.1.1.3 a+b two layers › YkuJ-like › YkuJ-like › YkuJ-like › PF26008 0.58 41.0 4.61e-01 84.9% 100.0%
3247178 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.56 42.0 4.48e-01 98.9% 95.0%
3928299 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.54 48.0 3.97e-01 100.0% 75.3%