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qh_7_scaffold_1_prodigal-single.1__X__X__00270
Bact-Virqh_7_scaffold_1_prodigal-single.1__X__X__00270
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 19-156
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01327.27 best | Pep_deformylase | 58.9 | 6.60e-16 | 82.6% | 71.8% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1rl4B00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.90 | 75.0 | 7.13e-01 | 100.0% | 75.6% |
| 5mteA00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.89 | 77.0 | 7.74e-01 | 100.0% | 89.1% |
| 1lmeA00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.89 | 77.0 | 7.40e-01 | 100.0% | 79.9% |
| 3qu1A00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.87 | 76.0 | 7.05e-01 | 100.0% | 74.4% |
| 3u04A00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.83 | 77.0 | 7.05e-01 | 100.0% | 76.7% |
| 1zxzB00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.79 | 77.0 | 6.69e-01 | 100.0% | 75.9% |
| 1szzA00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.79 | 75.0 | 6.85e-01 | 100.0% | 79.5% |
| 3g5kA00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.78 | 76.0 | 6.73e-01 | 100.0% | 79.8% |
| 1lm4A00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.77 | 74.0 | 6.53e-01 | 100.0% | 76.3% |
| 3e3uA00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.76 | 73.0 | 6.37e-01 | 100.0% | 71.4% |
| 5i4eA01 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.58 | 22.0 | 3.56e-01 | 92.8% | 100.0% |
| 4c0dB00 | 2.30.30.1020 | Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain | 0.51 | 33.0 | 2.99e-01 | 94.9% | 46.1% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3309735 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.92 | 65.0 | 6.78e-01 | 72.5% | 87.6% |
| 3987299 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.90 | 76.0 | 7.71e-01 | 100.0% | 88.1% |
| 2121396 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.89 | 76.0 | 7.72e-01 | 100.0% | 89.1% |
| 4030761 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.89 | 77.0 | 7.29e-01 | 100.0% | 77.5% |
| 4039287 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.88 | 78.0 | 7.14e-01 | 100.0% | 73.5% |
| 4133607 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.88 | 77.0 | 7.24e-01 | 100.0% | 77.5% |
| 4086694 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.88 | 77.0 | 7.45e-01 | 100.0% | 82.7% |
| 4256308 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.88 | 78.0 | 7.30e-01 | 100.0% | 78.1% |
| 4275485 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.88 | 77.0 | 7.07e-01 | 100.0% | 73.5% |
| 3966296 | 289.1.1.0 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase | 0.86 | 76.0 | 7.09e-01 | 100.0% | 76.4% |
| 3427612 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.86 | 77.0 | 6.83e-01 | 100.0% | 69.2% |
| 168447 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.85 | 77.0 | 6.81e-01 | 100.0% | 69.6% |
| 4422867 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.85 | 76.0 | 6.67e-01 | 100.0% | 66.8% |
| 981342 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.85 | 77.0 | 6.82e-01 | 100.0% | 70.3% |
| 4096233 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.84 | 77.0 | 7.00e-01 | 100.0% | 74.7% |
| 4999343 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.84 | 76.0 | 7.04e-01 | 100.0% | 78.2% |
| 4220709 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.84 | 76.0 | 6.95e-01 | 100.0% | 75.9% |
| 1877349 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.82 | 76.0 | 6.97e-01 | 100.0% | 78.1% |
| 2579249 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.82 | 78.0 | 7.38e-01 | 100.0% | 85.5% |
| 4420329 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.82 | 77.0 | 6.78e-01 | 100.0% | 72.4% |
| 4325293 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.80 | 78.0 | 6.88e-01 | 100.0% | 75.1% |
| 3276058 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.80 | 75.0 | 6.85e-01 | 100.0% | 78.2% |
| 140542 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.80 | 77.0 | 6.91e-01 | 100.0% | 76.5% |
| 4470382 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.80 | 77.0 | 6.90e-01 | 100.0% | 76.1% |
| 4224338 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.80 | 77.0 | 6.78e-01 | 100.0% | 73.7% |
| 3440362 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.79 | 76.0 | 6.70e-01 | 100.0% | 76.3% |
| 4539518 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.79 | 76.0 | 6.68e-01 | 100.0% | 75.3% |
| 3693404 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.79 | 76.0 | 6.68e-01 | 100.0% | 78.4% |
| 3401134 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.79 | 76.0 | 6.69e-01 | 100.0% | 77.2% |
| 3710708 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.79 | 74.0 | 6.28e-01 | 100.0% | 65.4% |
| 4165265 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.79 | 76.0 | 6.48e-01 | 100.0% | 68.6% |
| 4628922 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.79 | 75.0 | 6.76e-01 | 100.0% | 76.5% |
| 4443928 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.77 | 74.0 | 6.51e-01 | 100.0% | 74.7% |
| 3596563 | 289.1.1.0 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase | 0.77 | 74.0 | 6.25e-01 | 100.0% | 71.4% |
| 170021 | 289.1.1.1 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase | 0.76 | 73.0 | 6.37e-01 | 100.0% | 71.4% |
| 5044200 | 289.1.1.0 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase | 0.69 | 59.0 | 5.51e-01 | 89.1% | 77.0% |
| 5023445 | 289.1.1.2 ↗ | a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Zn_protease | 0.68 | 59.0 | 5.87e-01 | 89.9% | 88.6% |
| 3796323 | 3523.1.1.0 ↗ | beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) | 0.52 | 23.0 | 3.07e-01 | 97.1% | 75.7% |
| 3660003 | 5.1.10.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › ANAPC4_WD40 | 0.52 | 24.0 | 3.07e-01 | 70.3% | 72.5% |
D2
medium
residues 161-278_480-520
Domain cluster:
rep: SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00388__D99-198_300-332
D3
medium
residues 279-374
Domain cluster:
rep: IMGVR_UViG_3300045988_178991-3300045988-Ga0495776_136811_42162_44546__D269-361
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03161.19 best | LAGLIDADG_2 | 35.1 | 1.70e-08 | 94.8% | 56.2% |
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ab5B01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.72 | 58.0 | 5.25e-01 | 86.5% | 98.4% |
| 3ko2A00 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.67 | 56.0 | 4.69e-01 | 90.6% | 86.3% |
| 7qssA01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.66 | 59.0 | 4.78e-01 | 100.0% | 53.7% |
| 2dchX01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.65 | 51.0 | 5.20e-01 | 88.5% | 88.2% |
| 1dq3A04 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.64 | 55.0 | 5.16e-01 | 93.8% | 77.2% |
| 2dvkA00 | 3.30.1960.10 | Alpha Beta › 2-Layer Sandwich › SSo0622-like fold › tRNA wybutosine-synthesizing-like | 0.60 | 41.0 | 3.48e-01 | 70.8% | 89.2% |
| 2w7vA00 | 3.30.1360.100 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM | 0.58 | 40.0 | 4.31e-01 | 71.9% | 93.9% |
| 4m1xD00 | 3.30.1360.240 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.55 | 39.0 | 4.29e-01 | 72.9% | 100.0% |
| 2ogkD00 | 3.30.1440.10 | Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 | 0.55 | 40.0 | 3.62e-01 | 78.1% | 97.9% |
| 7x4lC02 | 3.90.1150.160 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.54 | 38.0 | 3.50e-01 | 74.0% | 64.1% |
| 3ue2A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.53 | 37.0 | 3.83e-01 | 70.8% | 86.4% |
| 2wnyA00 | 3.30.1440.10 | Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 | 0.53 | 39.0 | 3.50e-01 | 77.1% | 96.4% |
| 5hl8C00 | 3.30.1360.100 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM | 0.53 | 37.0 | 3.96e-01 | 72.9% | 98.7% |
| 3n5mB01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 39.0 | 3.25e-01 | 79.2% | 71.0% |
| 1repC02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 36.0 | 3.74e-01 | 71.9% | 100.0% |
| 3h0lA00 | 3.90.1300.10 | Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain | 0.52 | 37.0 | 2.43e-01 | 76.0% | 71.5% |
| 3gz7B00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 36.0 | 3.62e-01 | 79.2% | 73.5% |
| 3pqvC01 | 3.65.10.20 | Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › RNA 3'-terminal phosphate cyclase domain | 0.50 | 36.0 | 2.72e-01 | 76.0% | 92.2% |
ECOD (50)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4618987 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.75 | 59.0 | 5.39e-01 | 84.4% | 76.8% |
| 4940944 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.74 | 58.0 | 5.35e-01 | 84.4% | 80.8% |
| 4993455 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.74 | 62.0 | 5.80e-01 | 89.6% | 74.8% |
| 4972219 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.73 | 55.0 | 6.10e-01 | 81.2% | 100.0% |
| 5072185 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.71 | 62.0 | 6.28e-01 | 96.9% | 100.0% |
| 5013983 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.71 | 60.0 | 5.62e-01 | 95.8% | 75.0% |
| 4996524 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.69 | 62.0 | 4.93e-01 | 100.0% | 54.9% |
| 5027605 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.68 | 56.0 | 5.87e-01 | 92.7% | 98.8% |
| 3603087 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.68 | 56.0 | 5.91e-01 | 95.8% | 98.8% |
| 5028789 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.68 | 57.0 | 5.86e-01 | 90.6% | 98.9% |
| 3602223 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.68 | 53.0 | 5.35e-01 | 93.8% | 84.2% |
| 3603759 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.68 | 53.0 | 5.18e-01 | 83.3% | 81.9% |
| 1159603 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.65 | 51.0 | 5.41e-01 | 86.5% | 100.0% |
| 3178012 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.64 | 54.0 | 5.29e-01 | 92.7% | 100.0% |
| 5027689 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.63 | 49.0 | 5.24e-01 | 88.5% | 100.0% |
| 3205225 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.63 | 54.0 | 5.19e-01 | 93.8% | 98.2% |
| 5022418 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.63 | 35.0 | 4.14e-01 | 79.2% | 80.0% |
| 4937330 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.62 | 37.0 | 3.80e-01 | 78.1% | 60.0% |
| 4155058 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.62 | 53.0 | 4.91e-01 | 92.7% | 77.5% |
| 4155057 | 242.1.1.2 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 | 0.61 | 49.0 | 4.98e-01 | 86.5% | 87.4% |
| 4444298 | 3012.1.1.4 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Hydrolase_3 | 0.61 | 42.0 | 4.11e-01 | 70.8% | 100.0% |
| 3170512 | 242.1.1.2 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 | 0.60 | 47.0 | 4.57e-01 | 86.5% | 78.2% |
| 3975784 | 310.3.1.10 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › HofO | 0.59 | 40.0 | 4.21e-01 | 70.8% | 84.7% |
| 3290652 | 306.2.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor | 0.57 | 45.0 | 4.68e-01 | 88.5% | 100.0% |
| 3667726 | 242.1.1.2 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 | 0.57 | 44.0 | 4.39e-01 | 83.3% | 88.0% |
| 5076507 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.57 | 39.0 | 3.45e-01 | 71.9% | 100.0% |
| 3308212 | 2003.1.5.115 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_29 | 0.57 | 40.0 | 2.85e-01 | 72.9% | 80.7% |
| 3837734 | 2003.1.5.154 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_29, Methyltransf_11 | 0.57 | 40.0 | 2.59e-01 | 75.0% | 89.2% |
| 3292011 | 2003.1.5.154 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_29, Methyltransf_11 | 0.57 | 40.0 | 2.62e-01 | 75.0% | 95.9% |
| 3381170 | 2003.1.5.115 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_29 | 0.57 | 39.0 | 2.95e-01 | 72.9% | 86.9% |
| 3969151 | 304.14.1.1 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR | 0.56 | 37.0 | 4.04e-01 | 79.2% | 81.2% |
| 4995124 | 882.1.1.4 ↗ | a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding | 0.56 | 41.0 | 3.66e-01 | 78.1% | 97.9% |
| 3371729 | 2003.1.5.154 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_29, Methyltransf_11 | 0.56 | 39.0 | 2.45e-01 | 74.0% | 88.9% |
| 4987718 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.55 | 34.0 | 3.71e-01 | 80.2% | 75.0% |
| 3332606 | 2003.1.5.154 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_29, Methyltransf_11 | 0.54 | 41.0 | 2.60e-01 | 84.4% | 37.1% |
| 3657448 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.53 | 38.0 | 3.39e-01 | 75.0% | 92.9% |
| 3384789 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.53 | 36.0 | 3.51e-01 | 70.8% | 85.5% |
| 4022825 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.53 | 39.0 | 3.80e-01 | 79.2% | 70.5% |
| 4974604 | 882.1.1.4 ↗ | a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding | 0.53 | 39.0 | 3.59e-01 | 78.1% | 84.8% |
| 3468140 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.52 | 36.0 | 3.70e-01 | 70.8% | 81.1% |
| 4524153 | 304.22.1.1 ↗ | a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C | 0.52 | 35.0 | 3.74e-01 | 92.7% | 78.8% |
| 4487427 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.52 | 38.0 | 3.52e-01 | 77.1% | 61.6% |
| 5025980 | 101.1.2.914 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF6015 | 0.52 | 38.0 | 3.93e-01 | 76.0% | 95.6% |
| 4261231 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.52 | 40.0 | 3.88e-01 | 85.4% | 73.6% |
| 3345132 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.51 | 35.0 | 3.36e-01 | 70.8% | 86.1% |
| 5051728 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.51 | 33.0 | 2.65e-01 | 71.9% | 31.0% |
| 4998602 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 44.0 | 3.53e-01 | 100.0% | 57.1% |
| 3721344 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.50 | 34.0 | 3.47e-01 | 78.1% | 70.5% |
| 4994432 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 37.0 | 3.66e-01 | 99.0% | 72.4% |
| 4298844 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.50 | 37.0 | 3.72e-01 | 81.2% | 78.9% |
D4
medium
residues 375-479
Domain cluster:
rep: IMGVR_UViG_3300021483_000005-3300021483-Ga0190331_100001841__D235-348
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03161.19 best | LAGLIDADG_2 | 42.2 | 1.10e-10 | 67.6% | 40.2% |
D5
medium
residues 521-585