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qh_7_scaffold_1_prodigal-single.1__X__X__00425

Bact-Vir

qh_7_scaffold_1_prodigal-single.1__X__X__00425

Identity

Kingdom:
phage

Quality

71.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 152-212
PDB
D2 medium residues 9-61
PDB
D3 medium residues 65-139
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4a0zA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 54.0 5.97e-01 81.3% 94.9%
2jt1A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 48.0 4.98e-01 73.3% 81.7%
1hw1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 48.0 4.86e-01 74.7% 84.0%
5dukB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 51.0 5.41e-01 92.0% 91.0%
6az6A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 50.0 5.02e-01 78.7% 81.3%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 47.0 3.96e-01 74.7% 45.7%
4ivnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 46.0 4.64e-01 80.0% 73.7%
3mvpA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 41.0 4.75e-01 72.0% 100.0%
1etkA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 42.0 4.24e-01 70.7% 66.7%
3lmmC04 1.10.10.2340 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.64 46.0 4.39e-01 74.7% 70.1%
4ijaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 48.0 5.13e-01 84.0% 93.7%
4nb5B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 49.0 4.78e-01 93.3% 74.1%
2pjpA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 46.0 4.99e-01 78.7% 95.1%
2r3sB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 48.0 4.73e-01 85.3% 79.0%
2o38A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.62 38.0 4.10e-01 76.0% 70.8%
5eriA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 48.0 3.77e-01 84.0% 41.2%
2o3fA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 43.0 4.24e-01 77.3% 68.3%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 46.0 4.23e-01 86.7% 61.0%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.60 44.0 4.03e-01 84.0% 58.3%
3tqnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 44.0 4.52e-01 81.3% 86.3%
2a6cA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.59 39.0 3.96e-01 74.7% 67.1%
3by6C01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 45.0 4.51e-01 82.7% 84.4%
2oi8A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 45.0 3.35e-01 86.7% 54.2%
1n69B00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.57 32.0 3.21e-01 84.0% 48.8%
4dsfA04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.55 39.0 3.37e-01 72.0% 68.2%
1z1vA00 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.54 37.0 3.80e-01 73.3% 77.1%
1lliA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.53 34.0 3.28e-01 72.0% 56.2%
4yg1A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.53 31.0 3.23e-01 92.0% 59.7%
3mvpA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 43.0 3.58e-01 96.0% 92.6%
2ze7A02 1.10.287.890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 0.51 38.0 3.47e-01 86.7% 59.8%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3934282 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.80 52.0 6.10e-01 74.7% 100.0%
3929142 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 56.0 6.14e-01 84.0% 93.3%
3931679 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 51.0 5.98e-01 78.7% 100.0%
3929674 101.1.1.195 alpha arrays › HTH › HTH › Three-helical HTH › HTH_5 0.77 50.0 5.96e-01 76.0% 100.0%
3509611 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 51.0 5.72e-01 77.3% 92.7%
3937075 101.1.1.62 alpha arrays › HTH › HTH › Three-helical HTH › HTH_24 0.76 50.0 5.76e-01 77.3% 92.7%
3928067 101.1.1.356 alpha arrays › HTH › HTH › Three-helical HTH › HTH_11 0.76 50.0 5.76e-01 76.0% 92.7%
3933478 101.1.1.197 alpha arrays › HTH › HTH › Three-helical HTH › IF2_N 0.76 54.0 5.77e-01 89.3% 86.2%
3932648 101.1.1.195 alpha arrays › HTH › HTH › Three-helical HTH › HTH_5 0.75 48.0 5.47e-01 74.7% 89.1%
1769338 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 53.0 5.45e-01 78.7% 78.6%
3283589 101.1.1.368 alpha arrays › HTH › HTH › Three-helical HTH › HTH_58 0.74 48.0 5.56e-01 70.7% 98.0%
3923654 101.1.1.356 alpha arrays › HTH › HTH › Three-helical HTH › HTH_11 0.74 51.0 5.63e-01 86.7% 90.0%
3927026 101.1.1.195 alpha arrays › HTH › HTH › Three-helical HTH › HTH_5 0.74 51.0 4.88e-01 86.7% 62.4%
4040211 101.1.2.89 alpha arrays › HTH › HTH › winged helix domain › HTH_DeoR 0.74 51.0 5.58e-01 74.7% 88.3%
4610234 101.1.2.89 alpha arrays › HTH › HTH › winged helix domain › HTH_DeoR 0.74 50.0 5.54e-01 74.7% 88.3%
3931341 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 55.0 5.21e-01 96.0% 66.7%
3964709 101.1.1.118 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_IS630 0.73 48.0 5.55e-01 82.7% 100.0%
4974616 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.69 49.0 5.35e-01 74.7% 100.0%
3386729 101.1.2.142 alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2 0.68 46.0 4.83e-01 70.7% 77.9%
3619451 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.66 51.0 5.37e-01 86.7% 95.4%
5078072 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.65 48.0 5.09e-01 78.7% 87.7%
3429968 101.1.1.29 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.65 45.0 4.62e-01 70.7% 75.7%
3589672 101.1.1.11 alpha arrays › HTH › HTH › Three-helical HTH › HTH_6 0.65 47.0 4.82e-01 78.7% 81.4%
3986364 101.1.1.11 alpha arrays › HTH › HTH › Three-helical HTH › HTH_6 0.64 44.0 4.19e-01 73.3% 60.0%
4945046 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 42.0 3.79e-01 74.7% 49.5%
5003759 101.1.2.785 alpha arrays › HTH › HTH › winged helix domain › HTH_13 0.63 47.0 4.46e-01 81.3% 66.7%
4550123 101.1.1.29 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.63 42.0 4.63e-01 70.7% 86.7%
4007697 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.61 46.0 4.04e-01 81.3% 75.7%
3972412 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.60 48.0 4.27e-01 88.0% 81.8%
3276386 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 45.0 4.64e-01 82.7% 87.1%
4148139 101.1.1.30 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.59 40.0 3.27e-01 74.7% 34.8%
3285904 101.1.4.18 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_31 0.58 36.0 3.31e-01 73.3% 48.4%
3651950 102.1.1.1 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_1 0.57 37.0 4.05e-01 72.0% 83.3%
4560539 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.56 37.0 4.14e-01 72.0% 100.0%
3391440 102.1.1.16 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_2 0.56 41.0 3.93e-01 80.0% 73.3%
3287303 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.56 41.0 3.72e-01 80.0% 58.1%
4026960 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.54 37.0 3.71e-01 74.7% 72.0%
D4 medium residues 230-361
PDB
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1t0fA01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.80 60.0 5.57e-01 77.3% 76.5%
1xmxA02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.58 41.0 3.96e-01 71.2% 81.2%
2jwkA00 3.30.420.270 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.58 25.0 3.28e-01 100.0% 70.3%
3l0aA00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.56 43.0 3.47e-01 80.3% 53.0%
1y88A01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.56 44.0 4.49e-01 81.8% 100.0%
1sr4B00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.56 44.0 3.54e-01 82.6% 76.7%
2bgwB01 3.40.50.10130 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 39.0 3.99e-01 73.5% 87.8%
2hf9B00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 37.0 3.25e-01 72.7% 81.8%
3ux3A01 3.30.300.130 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Fe-S cluster assembly (FSCA) 0.52 35.0 4.00e-01 70.5% 92.8%
4zdoB00 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.51 43.0 2.95e-01 91.7% 59.0%
3klbA00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.50 36.0 3.43e-01 74.2% 88.9%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3278307 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.88 65.0 6.32e-01 75.8% 73.1%
3959070 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.66 49.0 4.74e-01 77.3% 85.3%
4978721 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.63 45.0 4.82e-01 74.2% 99.1%
3604181 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.62 46.0 3.86e-01 77.3% 87.0%
4958436 2008.1.1.217 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UvrD-helicase 0.61 45.0 2.68e-01 77.3% 13.3%
3386658 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.60 45.0 4.10e-01 78.8% 74.3%
4324924 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.59 45.0 4.17e-01 78.8% 74.5%
4029882 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.59 49.0 3.77e-01 89.4% 82.3%
4927000 2008.1.1.217 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UvrD-helicase 0.59 44.0 2.64e-01 78.0% 13.6%
4968040 2008.1.1.235 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF26618 0.58 41.0 4.18e-01 73.5% 90.8%
5053352 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.58 43.0 4.03e-01 77.3% 86.3%
4947569 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.57 42.0 4.05e-01 77.3% 92.9%
5079137 2008.1.1.16 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.57 43.0 4.22e-01 78.8% 91.4%
5076295 2008.1.1.107 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD 0.56 43.0 4.28e-01 79.5% 90.4%
5003652 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.56 43.0 4.52e-01 79.5% 95.7%
3389112 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.56 39.0 3.46e-01 71.2% 70.8%
5064206 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.56 42.0 3.40e-01 78.8% 54.2%
3261865 2004.1.1.73 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.56 41.0 3.56e-01 75.0% 83.0%
5064459 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.54 40.0 3.42e-01 77.3% 54.5%
5063088 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.54 40.0 3.18e-01 78.8% 53.4%
4385311 2008.1.1.7 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 0.53 39.0 3.23e-01 75.0% 78.7%
3417354 207.1.1.95 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 0.53 40.0 3.07e-01 78.0% 64.1%
4447742 2008.1.1.7 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 0.52 37.0 3.17e-01 73.5% 64.5%
3737532 2008.1.1.7 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 0.51 37.0 3.20e-01 75.0% 82.3%
3600465 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 38.0 2.68e-01 78.8% 72.4%