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qh_7_scaffold_1_prodigal-single.1__X__X__00455
Bact-Virqh_7_scaffold_1_prodigal-single.1__X__X__00455
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 51-224
Domain cluster:
rep: NC_021330__YP_008059651.1__M202-gp129__00089__D21-171
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05673.20 best | DUF815 | 25.4 | 1.00e-05 | 88.5% | 43.4% |
| PF00004.36 | AAA | 55.3 | 1.40e-14 | 65.5% | 97.0% |
D2
high
residues 235-300
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4m70B00 | 1.10.246.200 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain | 0.70 | 50.0 | 4.56e-01 | 77.3% | 96.7% |
| 2hroA02 | 1.10.274.10 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › PtsI, HPr-binding domain | 0.69 | 52.0 | 4.18e-01 | 80.3% | 62.5% |
| 3o66B01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.68 | 47.0 | 3.50e-01 | 72.7% | 95.8% |
| 2qsbA00 | 1.20.1440.50 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like | 0.61 | 42.0 | 3.90e-01 | 72.7% | 71.8% |
| 1rykA00 | 1.10.1470.10 | Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ | 0.59 | 40.0 | 3.99e-01 | 74.2% | 68.1% |
| 2kebA00 | 1.10.8.530 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › DNA polymerase alpha-primase, subunit B, N-terminal domain | 0.59 | 49.0 | 4.75e-01 | 100.0% | 93.6% |
| 1txuA01 | 1.10.246.120 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.59 | 41.0 | 3.67e-01 | 72.7% | 68.1% |
| 2qhoD00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.58 | 38.0 | 4.17e-01 | 83.3% | 91.8% |
| 2g7rA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.58 | 41.0 | 3.88e-01 | 78.8% | 89.5% |
| 2xd3A02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.57 | 51.0 | 3.65e-01 | 100.0% | 100.0% |
| 7by3B01 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.55 | 35.0 | 2.95e-01 | 90.9% | 36.8% |
| 3vokA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.55 | 42.0 | 3.14e-01 | 84.8% | 80.7% |
| 1a7lA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.55 | 48.0 | 3.47e-01 | 100.0% | 94.5% |
| 4ovjA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.54 | 48.0 | 3.37e-01 | 100.0% | 97.2% |
| 2g3bA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 45.0 | 3.30e-01 | 93.9% | 93.6% |
| 5grqA00 | 1.10.8.810 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Daxx helical bundle domain | 0.54 | 41.0 | 3.85e-01 | 89.4% | 82.2% |
| 2uvgA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.53 | 46.0 | 3.22e-01 | 100.0% | 76.8% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4930784 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.72 | 50.0 | 5.62e-01 | 72.7% | 100.0% |
| 4039740 | 3317.1.1.2 ↗ | alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › HTH_ParB | 0.72 | 60.0 | 6.09e-01 | 93.9% | 93.8% |
| 4651138 | 4957.1.1.0 ↗ | a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit | 0.72 | 50.0 | 5.20e-01 | 72.7% | 83.3% |
| 4040783 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.72 | 43.0 | 4.67e-01 | 95.5% | 72.7% |
| 5015550 | 643.1.1.1 ↗ | alpha arrays › Hypothetical protein MTH393 › Hypothetical protein MTH393 › Hypothetical protein MTH393 › DUF1959 | 0.72 | 55.0 | 4.36e-01 | 81.8% | 80.8% |
| 5059610 | 148.1.3.403 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RNA_pol_Rpb1_5 | 0.70 | 62.0 | 4.72e-01 | 100.0% | 44.5% |
| 4946474 | 3317.1.1.0 ↗ | alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain | 0.67 | 56.0 | 5.64e-01 | 100.0% | 96.9% |
| 3839508 | 3317.1.1.2 ↗ | alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › HTH_ParB | 0.66 | 51.0 | 5.01e-01 | 100.0% | 77.3% |
| 4082034 | 3317.1.1.2 ↗ | alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › HTH_ParB | 0.65 | 54.0 | 5.33e-01 | 98.5% | 87.1% |
| 5003091 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.64 | 49.0 | 5.09e-01 | 97.0% | 90.0% |
| 2849885 | 3317.1.1.0 ↗ | alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain | 0.64 | 50.0 | 5.21e-01 | 100.0% | 98.3% |
| 3587505 | 3317.1.1.2 ↗ | alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › HTH_ParB | 0.64 | 53.0 | 5.34e-01 | 98.5% | 95.4% |
| 4663216 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.64 | 46.0 | 4.01e-01 | 97.0% | 48.2% |
| 3941921 | 3317.1.1.0 ↗ | alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain | 0.63 | 47.0 | 4.97e-01 | 90.9% | 100.0% |
| 4157292 | 3317.1.1.2 ↗ | alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › HTH_ParB | 0.63 | 47.0 | 4.87e-01 | 98.5% | 93.3% |
| 3515170 | 3317.1.1.2 ↗ | alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › HTH_ParB | 0.63 | 48.0 | 4.90e-01 | 97.0% | 89.2% |
| 5009535 | 148.1.3.410 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF6955 | 0.63 | 53.0 | 4.72e-01 | 98.5% | 96.0% |
| 4033764 | 3317.1.1.2 ↗ | alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › HTH_ParB | 0.62 | 48.0 | 4.88e-01 | 97.0% | 90.8% |
| 4927768 | 3317.1.1.2 ↗ | alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › HTH_ParB | 0.61 | 45.0 | 4.78e-01 | 95.5% | 100.0% |
| 4927593 | 136.1.1.0 ↗ | alpha complex topology › Heme-dependent peroxidases › Heme-dependent peroxidases › Heme-dependent peroxidases | 0.59 | 48.0 | 3.14e-01 | 100.0% | 21.9% |
| 3225516 | 3238.1.1.1 ↗ | alpha superhelices › Mitochondrial mTERF-like › Mitochondrial mTERF › Mitochondrial mTERF › mTERF | 0.58 | 48.0 | 3.32e-01 | 100.0% | 27.3% |
| 3743040 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.57 | 40.0 | 3.48e-01 | 75.8% | 50.0% |
| 2897635 | 3317.3.1.0 ↗ | alpha arrays › KorB C-terminal domain-like › Helical domain of Rubisco accumulation factor 1 › Helical domain of Rubisco accumulation factor 1 | 0.56 | 46.0 | 3.96e-01 | 97.0% | 72.2% |
| 4341073 | 129.1.1.9 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › NAD_Gly3P_dh_C | 0.55 | 49.0 | 3.76e-01 | 100.0% | 91.5% |
| 5015200 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 39.0 | 2.57e-01 | 78.8% | 22.8% |