←Back to structures
qh_7_scaffold_1_prodigal-single.1__X__X__00602
Bact-Virqh_7_scaffold_1_prodigal-single.1__X__X__00602
Identity
- Kingdom:
- phage
Quality
66.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-72
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6vudA01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.74 | 65.0 | 5.53e-01 | 100.0% | 87.2% |
| 4oydB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.70 | 61.0 | 5.14e-01 | 100.0% | 83.8% |
| 1j5wA02 | 1.20.58.180 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 | 0.70 | 62.0 | 5.93e-01 | 100.0% | 84.4% |
| 1hs7A00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 61.0 | 5.44e-01 | 100.0% | 78.4% |
| 2kj9A00 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.67 | 50.0 | 4.18e-01 | 98.5% | 45.8% |
| 2ra1A03 | 1.20.58.770 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 54.0 | 5.51e-01 | 98.5% | 92.1% |
| 2d9dA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.66 | 57.0 | 5.23e-01 | 100.0% | 76.4% |
| 6gy8A01 | 1.20.1170.10 | Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › | 0.64 | 54.0 | 3.50e-01 | 100.0% | 84.0% |
| 1b48A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.63 | 53.0 | 4.63e-01 | 100.0% | 73.4% |
| 4q5nA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.63 | 54.0 | 4.62e-01 | 100.0% | 72.3% |
| 3r2qA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.62 | 53.0 | 4.53e-01 | 100.0% | 69.9% |
| 6lumD01 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.61 | 45.0 | 3.73e-01 | 80.3% | 63.2% |
| 2kiwA01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.59 | 45.0 | 4.19e-01 | 100.0% | 66.3% |
| 3k3oA02 | 1.20.58.1360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 52.0 | 4.81e-01 | 100.0% | 89.3% |
| 1e7uA05 | 1.10.1070.11 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain | 0.58 | 51.0 | 3.72e-01 | 100.0% | 71.7% |
| 4k35A03 | 1.10.287.1170 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › glycoside hydrolase family 81 endo-[beta] glucanase | 0.58 | 46.0 | 4.62e-01 | 100.0% | 87.1% |
| 3umbA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.56 | 46.0 | 4.39e-01 | 92.4% | 81.0% |
| 3qnmA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.55 | 47.0 | 4.26e-01 | 98.5% | 68.9% |
| 8d8lN01 | 1.10.287.1480 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.55 | 37.0 | 3.43e-01 | 75.8% | 53.5% |
| 3ajfA00 | 1.20.1440.190 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tenuivirus movement protein | 0.55 | 47.0 | 4.28e-01 | 100.0% | 75.0% |
| 8a0rA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.54 | 44.0 | 3.76e-01 | 100.0% | 56.9% |
| 5aj3N01 | 1.10.287.1480 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.54 | 39.0 | 3.55e-01 | 77.3% | 90.1% |
| 3colB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 46.0 | 3.49e-01 | 100.0% | 40.2% |
| 1icrA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.53 | 44.0 | 3.15e-01 | 97.0% | 73.1% |
| 2icwG02 | 1.10.10.530 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › mam-mhc complex, Chain D, Domain 2 | 0.53 | 45.0 | 4.13e-01 | 100.0% | 71.9% |
| 3umcD02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.52 | 42.0 | 4.00e-01 | 92.4% | 78.2% |
| 4ezbA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.51 | 45.0 | 3.74e-01 | 100.0% | 94.9% |
| 6k4yI00 | 1.10.1810.10 | Mainly Alpha › Orthogonal Bundle › Anti-sigma factor AsiA › Anti-Sigma Factor A | 0.51 | 40.0 | 3.66e-01 | 87.9% | 63.6% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5056430 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.78 | 68.0 | 6.66e-01 | 100.0% | 90.0% |
| 4076334 | 109.4.1.681 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2 | 0.76 | 67.0 | 4.91e-01 | 100.0% | 91.1% |
| 3902100 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.73 | 50.0 | 4.58e-01 | 71.2% | 74.1% |
| 3343815 | 109.4.1.308 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps39_1 | 0.70 | 56.0 | 3.37e-01 | 100.0% | 12.8% |
| 4950365 | 604.9.1.0 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 | 0.68 | 60.0 | 5.10e-01 | 100.0% | 68.2% |
| 3907213 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.68 | 58.0 | 5.14e-01 | 100.0% | 90.0% |
| 3940580 | 604.6.1.14 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › RasGAP_C | 0.67 | 58.0 | 4.94e-01 | 100.0% | 73.0% |
| 3228341 | 604.1.1.55 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › RasGAP_C | 0.67 | 59.0 | 4.95e-01 | 100.0% | 69.6% |
| 5020701 | 3755.3.1.637 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF7121 | 0.67 | 45.0 | 3.09e-01 | 71.2% | 20.4% |
| 4357455 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.67 | 47.0 | 4.39e-01 | 89.4% | 58.8% |
| 3880560 | 109.27.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain | 0.66 | 59.0 | 5.11e-01 | 98.5% | 73.0% |
| 3381865 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.66 | 57.0 | 3.32e-01 | 97.0% | 20.0% |
| 3796461 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.66 | 55.0 | 5.39e-01 | 98.5% | 86.7% |
| 4942208 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.65 | 56.0 | 5.59e-01 | 100.0% | 95.7% |
| 3601623 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.65 | 57.0 | 5.21e-01 | 100.0% | 77.8% |
| 3580281 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.65 | 56.0 | 4.87e-01 | 100.0% | 83.8% |
| 3593791 | 3069.1.1.0 ↗ | alpha arrays › BART › BART › BART | 0.64 | 55.0 | 4.36e-01 | 100.0% | 72.4% |
| 3583647 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.61 | 49.0 | 4.81e-01 | 97.0% | 82.7% |
| 2992201 | 6171.1.1.1 ↗ | alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › JHD | 0.59 | 53.0 | 4.47e-01 | 100.0% | 68.2% |
| 3309133 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.59 | 48.0 | 4.47e-01 | 100.0% | 70.6% |
| 2528132 | 601.35.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Nucleotidyl transferase L544 helical domain › Nucleotidyl transferase L544 helical domain › L544_helical | 0.59 | 51.0 | 3.91e-01 | 100.0% | 45.6% |
| 3530149 | 6171.1.1.1 ↗ | alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › JHD | 0.59 | 52.0 | 4.36e-01 | 100.0% | 65.2% |
| 5043880 | 605.4.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein | 0.57 | 53.0 | 4.80e-01 | 100.0% | 88.2% |
| 3339407 | 1.1.9.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › SAD_SRA | 0.55 | 48.0 | 3.31e-01 | 98.5% | 71.2% |
| 3932090 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.55 | 43.0 | 4.03e-01 | 93.9% | 68.8% |
| 3543525 | 150.3.1.6 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine › IL10 | 0.55 | 48.0 | 3.76e-01 | 100.0% | 49.0% |
| 2557383 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.55 | 44.0 | 3.65e-01 | 95.5% | 48.0% |
| 3458695 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.55 | 35.0 | 3.46e-01 | 92.4% | 61.4% |
| 5017961 | 608.1.1.1 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD | 0.55 | 44.0 | 3.77e-01 | 98.5% | 52.1% |
| 3592885 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.54 | 43.0 | 4.43e-01 | 98.5% | 98.3% |
| 3738224 | 190.1.1.3 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 | 0.53 | 36.0 | 3.41e-01 | 71.2% | 91.3% |
| 1893629 | 160.1.1.3 ↗ | alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › T3SS_ATPase_C | 0.52 | 43.0 | 4.08e-01 | 89.4% | 86.1% |
| 3225136 | 101.1.17.2 ↗ | alpha arrays › HTH › HTH › FF domain › FF | 0.52 | 44.0 | 4.39e-01 | 100.0% | 90.0% |
| 3707372 | 7039.1.1.0 ↗ | a+b complex topology › Helical domain of PCIF1/CAPAM › Helical domain of PCIF1/CAPAM › Helical domain of PCIF1/CAPAM | 0.51 | 42.0 | 2.94e-01 | 100.0% | 38.8% |