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qs_7_scaffold_0_curated_closed_complete_prodigal-single.1__X__X__00008

Bact-Vir

qs_7_scaffold_0_curated_closed_complete_prodigal-single.1__X__X__00008

Identity

Kingdom:
phage

Quality

86.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 76-142
PDB
Domain cluster: rep: IMGVR_UViG_3300025327_001519-3300025327-Ga0209751_100075766__D23-82
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01844.30 best HNH 22.7 1.20e-04 62.7% 89.4%
D2 high residues 160-199
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.90 62.0 5.23e-01 72.5% 46.8%
5y9sC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 58.0 4.72e-01 100.0% 69.5%
3dpuA03 1.10.10.2200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.67 52.0 4.50e-01 100.0% 66.7%
3p7nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 55.0 4.66e-01 100.0% 65.3%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 49.0 4.00e-01 100.0% 44.7%
2aj6A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.65 43.0 3.14e-01 70.0% 25.0%
6v7xB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 52.0 4.83e-01 100.0% 83.9%
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 53.0 4.70e-01 100.0% 63.5%
6jqsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 51.0 4.53e-01 100.0% 70.1%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 48.0 4.03e-01 100.0% 55.2%
3iuoA00 1.10.10.1390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ATP-dependent DNA helicase RecQ 0.62 48.0 3.73e-01 100.0% 36.7%
1i5nB00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.59 45.0 3.21e-01 100.0% 27.4%
1bedA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.59 47.0 3.21e-01 100.0% 47.5%
1uqtA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.59 47.0 2.95e-01 100.0% 15.6%
3favD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.57 43.0 3.55e-01 97.5% 43.6%
2h92A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 41.0 2.67e-01 85.0% 76.4%
1xc5A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.57 44.0 4.33e-01 100.0% 89.6%
7ef6A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.57 38.0 2.63e-01 72.5% 64.2%
1tv8B00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.56 40.0 2.38e-01 77.5% 25.2%
4b3hA03 1.10.1040.50 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › 0.56 40.0 2.71e-01 90.0% 76.9%
2xb4A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 43.0 2.68e-01 85.0% 17.5%
3iylW04 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 43.0 2.79e-01 100.0% 18.5%
2f33A01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.51 40.0 3.46e-01 95.0% 64.8%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3973679 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 63.0 5.00e-01 100.0% 67.1%
3196401 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.70 59.0 5.43e-01 100.0% 72.7%
5004890 101.1.2.195 ↗ alpha arrays › HTH › HTH › winged helix domain › Fic-like_C 0.69 53.0 4.56e-01 100.0% 53.8%
5022000 101.1.2.195 ↗ alpha arrays › HTH › HTH › winged helix domain › Fic-like_C 0.69 53.0 4.46e-01 100.0% 50.6%
3279224 101.32.1.1 ↗ alpha arrays › HTH › bacterioferritin-associated ferredoxin › bacterioferritin-associated ferredoxin › Fer2_BFD 0.68 54.0 5.05e-01 100.0% 76.4%
3236790 101.1.1.76 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.68 55.0 4.10e-01 100.0% 34.5%
3931961 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 53.0 5.02e-01 100.0% 76.0%
3970263 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.66 52.0 4.76e-01 100.0% 81.7%
3974811 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.65 54.0 5.33e-01 100.0% 100.0%
4938401 101.1.2.674 ↗ alpha arrays › HTH › HTH › winged helix domain › PF29648 0.64 51.0 4.29e-01 100.0% 52.5%
3926268 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.64 52.0 4.10e-01 100.0% 42.2%
3425662 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.64 48.0 3.40e-01 87.5% 92.1%
2761 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.63 48.0 4.03e-01 100.0% 55.2%
3945880 101.1.1.60 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.62 48.0 4.53e-01 100.0% 70.9%
4499345 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.62 50.0 4.82e-01 100.0% 88.0%
3941460 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.62 49.0 4.40e-01 100.0% 76.9%
4809777 6004.1.1.2 ↗ extended segments › FATC domain › FATC domain › FATC domain › ETC_C1_NDUFA5 0.62 42.0 3.20e-01 80.0% 26.6%
3724068 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 47.0 4.49e-01 100.0% 81.8%
3337820 101.1.1.123 ↗ alpha arrays › HTH › HTH › Three-helical HTH › MCRS_N 0.61 49.0 4.10e-01 100.0% 51.2%
2441957 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.61 48.0 3.95e-01 100.0% 68.9%
3301563 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.60 48.0 3.79e-01 97.5% 45.5%
3693312 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.59 47.0 4.33e-01 100.0% 70.0%
3422859 650.1.1.0 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.57 48.0 3.79e-01 100.0% 71.1%
3600737 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 41.0 3.87e-01 100.0% 64.6%
3696652 7580.1.1.1 ↗ a/b three-layered sandwiches › RibA-like › RibA-like › RibA-like › GTP_cyclohydro2 0.55 44.0 2.81e-01 95.0% 47.7%
4624086 2004.1.1.41 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADK 0.55 43.0 2.94e-01 100.0% 77.1%
3949407 129.1.1.2 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 3HCDH 0.53 41.0 3.09e-01 100.0% 55.2%
5001400 2006.1.1.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.52 35.0 2.27e-01 75.0% 13.2%
D3 medium residues 1-75
PDB
Domain cluster: rep: 04302015_21_scaffold_6_prodigal-single.1__X__X__00207__D1-65