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qs_7_scaffold_0_curated_closed_complete_prodigal-single.1__X__X__00068

Bact-Vir

qs_7_scaffold_0_curated_closed_complete_prodigal-single.1__X__X__00068

Identity

Kingdom:
phage

Quality

72.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-92
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3b8mC02 1.10.287.210 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 44.0 3.83e-01 72.1% 52.9%
1lbvA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.62 42.0 3.38e-01 70.6% 70.3%
4xhpA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 37.0 2.84e-01 72.1% 26.6%
2cshA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.56 31.0 2.83e-01 100.0% 40.0%
3jyhA02 1.20.120.980 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Serine carboxypeptidase S28, SKS domain 0.55 38.0 2.95e-01 72.1% 34.9%
5fb0A02 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.55 41.0 3.47e-01 79.4% 51.8%
7w5gA01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.54 48.0 3.06e-01 100.0% 82.4%
1o7fA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 44.0 3.46e-01 97.1% 89.7%
1r3nG01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.52 44.0 2.93e-01 100.0% 47.1%
4ppuA00 1.10.590.10 Mainly Alpha › Orthogonal Bundle › Chorismate Mutase, subunit A › Chorismate mutase, AroQ class superfamily, eukaryotic 0.52 44.0 3.08e-01 100.0% 83.3%
2hezA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.52 45.0 2.93e-01 100.0% 41.6%
6guvA00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.51 44.0 3.58e-01 100.0% 76.9%
7l9pK01 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.50 37.0 3.11e-01 79.4% 100.0%
1zw8A01 6.10.140.370 Special › Helix non-globular › Helix Hairpins › 0.50 33.0 3.51e-01 75.0% 92.0%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5062471 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.66 40.0 3.35e-01 70.6% 37.3%
3692348 3281.1.1.1 ↗ alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M 0.64 55.0 3.29e-01 100.0% 78.1%
3876788 2004.1.1.345 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF4062 0.59 40.0 2.83e-01 72.1% 96.0%
3787647 192.2.1.31 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › PRA1 0.58 37.0 3.26e-01 70.6% 44.0%
5015850 205.1.1.1 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4 0.58 39.0 3.13e-01 72.1% 58.8%
3599116 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.57 46.0 4.17e-01 92.6% 65.3%
4289692 306.7.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.57 37.0 3.03e-01 95.6% 37.5%
3739470 192.2.1.31 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › PRA1 0.57 36.0 2.83e-01 70.6% 30.3%
4389819 101.1.1.8 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TEA 0.56 39.0 3.45e-01 73.5% 47.6%
5030008 3930.2.1.0 ↗ alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in endoribonuclease Dicer › Helical bundle in endoribonuclease Dicer 0.56 40.0 3.16e-01 80.9% 96.5%
3185315 10.12.1.25 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PhyH 0.55 47.0 3.13e-01 100.0% 92.5%
4666985 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.55 38.0 3.45e-01 73.5% 50.0%
3939444 101.1.2.12 ↗ alpha arrays › HTH › HTH › winged helix domain › DEP 0.55 40.0 3.12e-01 77.9% 55.2%
3173200 101.1.1.8 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TEA 0.55 41.0 3.52e-01 83.8% 50.0%
5058423 620.1.1.2 ↗ alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DinB 0.54 40.0 3.14e-01 79.4% 80.7%
3469416 101.19.1.1 ↗ alpha arrays › HTH › C-terminal subdomain in oxygen-independent coproporphyrinogen III oxidase HemN › C-terminal subdomain in oxygen-independent coproporphyrinogen III oxidase HemN › HemN_C 0.53 36.0 3.25e-01 72.1% 54.3%
4616208 2008.1.1.196 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF27477 0.53 38.0 2.62e-01 79.4% 25.4%
3278518 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 43.0 3.26e-01 92.6% 57.7%
4954786 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.51 32.0 3.04e-01 70.6% 51.8%