Back to structures

qs_7_scaffold_0_curated_closed_complete_prodigal-single.1__X__X__00131

Bact-Vir

qs_7_scaffold_0_curated_closed_complete_prodigal-single.1__X__X__00131

Identity

Kingdom:
phage

Quality

65.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 43-110
PDB
Domain cluster: representative
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1a87A01 3.30.1120.60 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Colicin 0.80 60.0 5.23e-01 77.9% 59.8%
2ffsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.77 61.0 4.68e-01 83.8% 46.2%
7snsB01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.75 56.0 4.18e-01 79.4% 36.4%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.74 67.0 4.90e-01 100.0% 64.4%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.74 51.0 3.42e-01 72.1% 49.4%
1k8kD01 3.30.1460.20 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.74 58.0 4.41e-01 83.8% 73.5%
4fr9A00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.72 54.0 4.29e-01 80.9% 54.6%
2w7qB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.72 57.0 4.18e-01 85.3% 34.4%
2zylA02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.71 61.0 4.29e-01 97.1% 58.1%
1qj8A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.70 52.0 4.10e-01 80.9% 95.9%
5upiA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.70 54.0 3.91e-01 83.8% 78.2%
6fopA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.70 54.0 3.72e-01 83.8% 63.3%
2lnjA00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.68 58.0 4.33e-01 94.1% 52.9%
1so7A00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.67 51.0 3.26e-01 83.8% 30.2%
7xhlD02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.67 52.0 3.40e-01 83.8% 69.0%
3ci0K01 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.67 55.0 4.72e-01 91.2% 57.7%
4lgvD02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.67 51.0 3.47e-01 83.8% 72.1%
2gfgA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.66 51.0 3.75e-01 85.3% 44.0%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.66 57.0 4.68e-01 97.1% 68.0%
4oddA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.66 52.0 4.03e-01 86.8% 55.7%
4fb5A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.65 53.0 3.65e-01 89.7% 68.2%
2xqyA01 3.30.500.50 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.65 48.0 3.57e-01 79.4% 33.7%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 51.0 4.02e-01 88.2% 83.8%
5h4eA01 2.60.110.10 Mainly Beta › Sandwich › Thaumatin › Thaumatin 0.65 57.0 3.95e-01 100.0% 98.7%
4h3vB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.64 52.0 3.59e-01 89.7% 69.7%
1wmiA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.63 43.0 3.96e-01 77.9% 54.5%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.62 54.0 4.49e-01 97.1% 59.2%
3gwiA00 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.62 53.0 4.03e-01 97.1% 73.8%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.61 51.0 4.69e-01 97.1% 86.2%
2xepB01 3.10.450.280 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 47.0 4.01e-01 83.8% 91.2%
4rbnA01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 53.0 4.27e-01 97.1% 59.7%
4mveA00 2.40.128.580 Mainly Beta › Beta Barrel › Lipocalin › GXWXG domain 0.60 46.0 3.67e-01 85.3% 52.4%
1zldA00 2.60.40.1920 Mainly Beta › Sandwich › Immunoglobulin-like › Proteinaceous host-selective toxin ToxA 0.60 53.0 4.67e-01 100.0% 96.1%
2bvbA00 2.60.120.710 Mainly Beta › Sandwich › Jelly Rolls › Toxoplasma gondii micronemal protein 1 TgMIC1 0.59 54.0 4.24e-01 100.0% 80.3%
2zf3C00 2.50.20.30 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.59 45.0 3.41e-01 85.3% 33.0%
3zqsA02 3.10.110.20 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › RWD domain-like 0.59 50.0 4.55e-01 100.0% 84.7%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.59 48.0 4.57e-01 89.7% 89.9%
5jozA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 49.0 3.26e-01 95.6% 62.6%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.58 49.0 3.84e-01 95.6% 46.8%
1ospO01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.58 49.0 4.36e-01 98.5% 80.0%
1wthA02 3.10.450.190 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 44.0 3.87e-01 82.4% 87.3%
2wjsA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 51.0 3.74e-01 97.1% 82.3%
2o3bB00 3.40.1460.10 Alpha Beta › 3-Layer(aba) Sandwich › Nuia › Nuclease A inhibitor-like 0.58 41.0 3.33e-01 75.0% 68.1%
3k0yA02 2.60.40.2370 Mainly Beta › Sandwich › Immunoglobulin-like › NigD-like, C-terminal beta sandwich domain 0.57 45.0 3.65e-01 86.8% 92.5%
1h6lA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.57 47.0 3.02e-01 92.6% 91.8%
3h3hB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 42.0 3.57e-01 79.4% 96.7%
1s2kA00 2.60.120.700 Mainly Beta › Sandwich › Jelly Rolls › Peptidase G1 0.56 49.0 3.52e-01 97.1% 63.8%
3jtzA00 3.30.160.390 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain 0.55 46.0 4.52e-01 98.5% 88.3%
1j0wB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 38.0 3.40e-01 75.0% 68.9%
3f2bA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 47.0 4.20e-01 97.1% 80.2%
2x0qA01 3.30.310.280 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.53 45.0 3.71e-01 100.0% 50.4%
2xp1A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 45.0 4.14e-01 100.0% 81.1%
3tu3A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.53 44.0 3.81e-01 100.0% 84.9%
1jg1A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 40.0 2.92e-01 85.3% 56.7%
7vljA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.52 39.0 3.57e-01 82.4% 80.6%
1vwxT01 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.52 36.0 3.30e-01 75.0% 66.0%
2wc7A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.50 42.0 4.04e-01 94.1% 93.7%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3990496 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.82 61.0 6.07e-01 77.9% 80.0%
3691478 331.3.1.46 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF7053 0.77 59.0 4.11e-01 82.4% 48.8%
5006845 295.1.1.27 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PF25991 0.76 58.0 6.39e-01 80.9% 100.0%
4012616 220.1.1.74 beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H 0.76 67.0 5.58e-01 97.1% 81.7%
3418904 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.75 66.0 5.81e-01 98.5% 89.0%
3721965 220.1.1.74 beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H 0.74 65.0 5.46e-01 97.1% 80.9%
4225063 3840.1.1.2 a+b two layers › Bacterial conjugation factor PsiB › Bacterial conjugation factor PsiB › Bacterial conjugation factor PsiB › PerB 0.74 65.0 5.61e-01 100.0% 69.1%
3463123 210.1.2.8 a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › TANGO2 0.74 56.0 3.64e-01 80.9% 99.7%
3929502 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.74 63.0 5.60e-01 92.6% 77.7%
3725709 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.73 60.0 5.06e-01 88.2% 80.9%
3286246 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.73 65.0 5.60e-01 98.5% 90.4%
2581425 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.72 53.0 5.81e-01 80.9% 96.4%
3549354 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.72 60.0 3.48e-01 89.7% 37.1%
3427945 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.72 63.0 5.55e-01 98.5% 91.0%
3572103 220.1.1.74 beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H 0.71 64.0 5.10e-01 100.0% 77.0%
865437 241.1.1.2 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C 0.70 61.0 4.71e-01 97.1% 81.5%
3996732 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.70 59.0 3.77e-01 91.2% 25.4%
3505083 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.70 54.0 3.39e-01 83.8% 25.9%
3736590 9.14.1.0 beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W 0.69 51.0 4.47e-01 77.9% 55.0%
4963369 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.69 57.0 4.24e-01 91.2% 42.9%
3686499 298.1.1.25 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › ox_reductase_C 0.68 57.0 3.80e-01 92.6% 75.8%
3959634 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.67 49.0 4.16e-01 77.9% 52.2%
4583801 77.1.1.1 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Lipoprotein_1 0.67 60.0 4.08e-01 100.0% 35.5%
3329666 5.1.4.36 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.66 51.0 3.16e-01 82.4% 34.4%
1554358 3146.1.1.1 a+b complex topology › gH main domain › gH main domain › gH main domain › Herpes_glycop_H 0.66 49.0 2.87e-01 80.9% 15.5%
119302 3146.1.1.0 a+b complex topology › gH main domain › gH main domain › gH main domain 0.65 48.0 3.09e-01 79.4% 18.1%
5062817 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.65 47.0 3.77e-01 76.5% 78.2%
4927548 331.3.1.9 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.64 47.0 3.92e-01 77.9% 56.7%
2521119 5084.1.1.3 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › MSP 0.64 52.0 3.68e-01 95.6% 82.9%
3387958 868.1.1.0 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.64 48.0 3.70e-01 80.9% 36.1%
3939294 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 52.0 3.23e-01 89.7% 31.9%
3517016 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.63 51.0 3.28e-01 88.2% 51.7%
3853086 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 54.0 3.47e-01 98.5% 93.7%
3602029 868.1.1.0 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.63 48.0 3.55e-01 85.3% 34.4%
3214007 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.63 48.0 4.04e-01 85.3% 55.2%
3275971 5.1.4.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.63 50.0 3.22e-01 89.7% 63.4%
151848 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.62 50.0 3.67e-01 89.7% 57.4%
3644180 5.1.5.98 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › b-prop_At3g26010-like 0.61 52.0 3.37e-01 95.6% 89.6%
4982022 300.1.1.6 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › Regulator_TrmB 0.60 46.0 3.79e-01 83.8% 71.5%
1108151 9.20.1.1 beta barrels › Lipocalins/Streptavidin › Uncharacterized protein Tcur_1030 › Uncharacterized protein Tcur_1030 › GXWXG,DUF4334 0.60 46.0 3.66e-01 85.3% 52.0%
3531356 5.1.5.192 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, WD40_MABP1-WDR62_2nd 0.59 47.0 2.91e-01 88.2% 36.9%
3867932 5.1.4.464 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, ANAPC4_WD40, WD40_MABP1-WDR62_2nd 0.59 49.0 3.06e-01 94.1% 58.1%
3476559 5.1.13.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › Propeller domain of DCAF15 › DCAF15_WD40 0.58 48.0 3.11e-01 94.1% 45.5%
3526472 5.1.5.104 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, ANAPC4_WD40, WD40_MABP1-WDR62_2nd 0.58 49.0 3.08e-01 97.1% 45.0%
5079413 5.1.3.272 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SBBP 0.58 49.0 3.36e-01 98.5% 88.3%
3494509 5.1.4.164 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_VPS8 0.58 48.0 2.93e-01 95.6% 37.6%
3928054 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 49.0 3.31e-01 95.6% 54.3%
4941649 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 45.0 4.12e-01 88.2% 78.9%
3436743 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.57 49.0 3.24e-01 100.0% 80.6%
3219739 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 48.0 3.12e-01 98.5% 83.4%
5061444 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.55 44.0 4.08e-01 85.3% 91.8%
119300 3153.1.1.1 a+b two layers › PipX › PipX › PipX › PipX 0.52 41.0 3.90e-01 95.6% 72.4%
3276059 5.1.4.329 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30693 0.52 44.0 2.79e-01 100.0% 40.4%