Back to structures

qs_7_scaffold_0_curated_closed_complete_prodigal-single.1__X__X__00215

Bact-Vir

qs_7_scaffold_0_curated_closed_complete_prodigal-single.1__X__X__00215

Identity

Kingdom:
phage

Quality

81.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 28-128
PDB
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2y3mB01 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.72 44.0 5.01e-01 93.1% 81.8%
3im8A02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.71 45.0 5.14e-01 100.0% 87.7%
3tzyA02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.70 41.0 4.86e-01 100.0% 84.3%
3gr5A02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.70 45.0 5.31e-01 94.1% 95.6%
7ahbB01 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.70 41.0 5.23e-01 100.0% 100.0%
7agpA01 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.70 42.0 5.30e-01 100.0% 100.0%
3tqeA02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.68 43.0 4.95e-01 100.0% 87.7%
2h1yA02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.68 41.0 4.76e-01 100.0% 85.7%
3c6kA01 3.30.160.110 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain 0.68 55.0 5.73e-01 100.0% 94.7%
2mzwA01 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.67 45.0 5.04e-01 99.0% 90.8%
4qbuA03 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.65 41.0 4.84e-01 100.0% 95.5%
3vtiA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 47.0 4.79e-01 100.0% 79.2%
4e9jA02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.64 41.0 4.81e-01 93.1% 95.7%
4pwuC00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.63 43.0 4.78e-01 100.0% 91.0%
1fvqA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 41.0 4.68e-01 100.0% 97.2%
4paaA04 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.61 48.0 4.61e-01 98.0% 73.5%
1yj7B01 3.30.70.1530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 0.61 37.0 4.22e-01 95.0% 85.9%
3girA02 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.60 47.0 5.02e-01 98.0% 100.0%
2qziA00 3.40.1720.10 Alpha Beta › 3-Layer(aba) Sandwich › Streptococcus thermophilus LMG 18311 protein like › Streptococcus thermophilus LMG 18311 protein like 0.59 44.0 4.46e-01 79.2% 88.1%
4qu7A00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.58 42.0 4.51e-01 100.0% 93.8%
4ga6A04 3.90.1170.30 Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Pyrimidine nucleoside phosphorylase-like, C-terminal domain 0.58 44.0 4.81e-01 94.1% 98.8%
2cxiA02 3.50.40.10 Alpha Beta › 3-Layer(bba) Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 3 › Phenylalanyl-trna Synthetase, Chain B, domain 3 0.58 51.0 4.18e-01 100.0% 87.4%
5d4nC00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 44.0 4.46e-01 100.0% 83.7%
2iiiA00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.57 51.0 4.89e-01 100.0% 85.8%
1l3kA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.56 40.0 4.30e-01 100.0% 91.7%
2m9kA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.55 40.0 4.19e-01 100.0% 84.9%
1lf6A01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 45.0 3.35e-01 90.1% 62.6%
3k5iA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.55 38.0 3.07e-01 71.3% 79.3%
2rilA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 43.0 4.42e-01 100.0% 90.5%
4pxeA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 49.0 4.71e-01 100.0% 98.3%
5upiA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.54 46.0 3.72e-01 92.1% 72.3%
1m1hA02 2.60.320.10 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain 0.54 31.0 3.40e-01 83.2% 68.3%
1y9lA00 2.40.128.230 Mainly Beta › Beta Barrel › Lipocalin › Pilot protein MxiM 0.53 39.0 3.82e-01 80.2% 70.9%
6fmeA03 2.20.220.10 Mainly Beta › Single Sheet › Glycosyl hydrolase fold › alpha-Amylases 0.53 32.0 3.96e-01 76.2% 100.0%
2z04B03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.53 37.0 3.08e-01 73.3% 79.6%
3g5oC00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.53 38.0 4.04e-01 75.2% 85.1%
1wkiA01 3.90.1170.10 Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Ribosomal protein L16/L10 0.52 46.0 4.57e-01 100.0% 94.5%
3rpfA00 3.90.1170.40 Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Molybdopterin biosynthesis MoaE subunit 0.52 44.0 3.87e-01 95.0% 62.8%
5bpdA02 3.30.870.10 Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A 0.52 37.0 3.39e-01 76.2% 84.6%
3i4hX01 3.30.70.1890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 48.0 4.40e-01 100.0% 92.2%
1jg8A01 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.52 45.0 3.45e-01 98.0% 76.4%
3viuA04 3.90.650.10 Alpha Beta › Alpha-Beta Complex › Phosphoribosyl-aminoimidazole Synthetase; Chain A, domain 2 › PurM-like C-terminal domain 0.51 45.0 3.83e-01 100.0% 74.6%
2j8aA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 40.0 4.19e-01 100.0% 100.0%
2bf3B00 3.90.56.10 Alpha Beta › Alpha-Beta Complex › Phenol Hydroxylase P2 Protein › Monooxygenase component MmoB/DmpM 0.51 36.0 3.78e-01 100.0% 85.2%
1k1gA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.51 42.0 4.04e-01 94.1% 78.7%
5gv0A00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.51 42.0 3.58e-01 89.1% 70.4%
2w18A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 37.0 2.62e-01 76.2% 98.7%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3402596 304.110.1.3 a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › Prp3_C 0.76 50.0 4.85e-01 100.0% 60.0%
4226339 304.11.1.0 a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.74 47.0 5.49e-01 100.0% 91.4%
4950402 881.4.1.0 a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB 0.72 44.0 3.99e-01 76.2% 46.9%
3387917 304.8.1.7 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ALS_ss_C 0.70 44.0 5.11e-01 100.0% 91.4%
4282163 304.11.1.0 a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.69 44.0 5.18e-01 100.0% 94.3%
4151399 304.8.1.5 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.68 49.0 5.48e-01 99.0% 95.0%
3589482 304.11.1.0 a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.68 44.0 5.06e-01 100.0% 92.9%
1833373 304.11.1.0 a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.68 41.0 4.81e-01 100.0% 88.2%
3968152 304.11.1.0 a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.68 43.0 4.91e-01 100.0% 86.7%
4974982 304.120.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.68 39.0 4.70e-01 100.0% 93.3%
3733981 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.67 44.0 5.05e-01 94.1% 95.7%
5045322 331.6.1.0 a+b two layers › TBP-like › MoaD-related protein, C-terminal domain › MoaD-related protein, C-terminal domain 0.67 56.0 5.17e-01 93.1% 72.0%
5066425 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.64 43.0 4.70e-01 100.0% 86.3%
1141888 331.10.2.2 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › SpmSyn_N 0.64 53.0 5.44e-01 100.0% 93.8%
3304533 304.11.1.0 a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.64 42.0 4.81e-01 100.0% 90.7%
4534213 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.62 41.0 4.45e-01 100.0% 80.0%
4932328 321.1.1.4 a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GatB_N 0.62 56.0 3.96e-01 100.0% 68.1%
4972691 304.5.1.0 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.62 44.0 4.45e-01 100.0% 74.0%
5036807 3111.1.1.0 beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain 0.62 44.0 4.59e-01 83.2% 78.9%
3214500 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.62 44.0 4.75e-01 100.0% 93.8%
3716549 304.34.1.0 a+b two layers › Alpha-beta plaits › Nucleoside diphosphate kinases › Nucleoside diphosphate kinases 0.57 43.0 4.41e-01 100.0% 83.0%
4981261 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.57 36.0 4.04e-01 99.0% 85.3%
3209971 604.1.1.135 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF155 0.57 48.0 3.47e-01 100.0% 32.2%
5054556 331.2.1.0 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.56 44.0 4.61e-01 94.1% 95.6%
4173501 304.44.1.2 a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › PriA_C 0.56 46.0 4.66e-01 100.0% 89.0%
3528327 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.56 40.0 4.22e-01 100.0% 85.6%
3957060 325.1.6.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.55 48.0 4.26e-01 95.0% 77.9%
3598177 318.1.1.0 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.55 41.0 4.46e-01 94.1% 92.9%
4935109 300.1.1.8 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.55 40.0 3.42e-01 77.2% 78.8%
3681742 220.1.1.182 beta barrels › PH domain-like › PH domain-like › PH domain-like › RDR6_2nd 0.55 44.0 3.76e-01 86.1% 66.1%
166071 304.4.1.4 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.55 43.0 4.42e-01 100.0% 90.5%
4974181 331.3.1.74 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PF27226 0.55 41.0 4.17e-01 78.2% 81.8%
3258204 331.17.1.1 a+b two layers › TBP-like › Atp11 › Atp11 › ATP11 0.55 46.0 3.90e-01 93.1% 64.7%
4966080 300.1.1.18 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › FilR1_middle 0.54 40.0 3.48e-01 77.2% 81.3%
3344404 220.1.1.182 beta barrels › PH domain-like › PH domain-like › PH domain-like › RDR6_2nd 0.54 43.0 3.63e-01 86.1% 63.4%
3189301 304.25.1.0 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain 0.54 49.0 4.81e-01 99.0% 100.0%
3410208 331.17.1.1 a+b two layers › TBP-like › Atp11 › Atp11 › ATP11 0.54 46.0 3.87e-01 93.1% 64.1%
3188768 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.54 48.0 4.66e-01 99.0% 89.1%
4011997 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 39.0 3.30e-01 77.2% 96.5%
5077675 304.158.1.0 a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs 0.53 48.0 3.84e-01 100.0% 62.3%
3992848 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.53 43.0 4.23e-01 100.0% 81.8%
3717790 4261.1.1.2 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › BK_channel_a 0.53 37.0 3.57e-01 92.1% 61.7%
3624917 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.52 43.0 4.13e-01 100.0% 75.8%
3967507 300.1.1.8 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.52 46.0 3.48e-01 100.0% 93.6%
3584129 5.1.4.37 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.51 42.0 2.66e-01 89.1% 35.5%
4984501 304.51.1.0 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related 0.51 46.0 4.32e-01 100.0% 96.8%
3918694 4099.1.1.10 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med1 0.51 36.0 3.75e-01 85.1% 80.0%
3537588 331.17.1.1 a+b two layers › TBP-like › Atp11 › Atp11 › ATP11 0.51 42.0 3.59e-01 93.1% 63.4%
4024234 2003.1.5.28 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › mRNA_G-N7_MeTrfase 0.50 42.0 2.89e-01 90.1% 37.5%
3733057 7033.1.1.1 a+b complex topology › Ribonuclease P protein subunit p40 › Ribonuclease P protein subunit p40 › Ribonuclease P protein subunit p40 › Ribonuc_P_40 0.50 45.0 3.06e-01 100.0% 84.3%
4108467 3459.1.1.1 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › FAIM1 0.50 38.0 4.13e-01 85.1% 95.3%
3399872 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.50 37.0 2.93e-01 76.2% 81.0%