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qs_7_scaffold_0_curated_closed_complete_prodigal-single.1__X__X__00326
Bact-Virqs_7_scaffold_0_curated_closed_complete_prodigal-single.1__X__X__00326
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-119
Domain cluster:
rep: MK105819.1__AZB50584.1__X__00063__D4-100
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00383.30 best | dCMP_cyt_deam_1 | 44.0 | 2.30e-11 | 87.8% | 89.2% |
| PF08211.19 | dCMP_cyt_deam_2 | 25.7 | 1.60e-05 | 63.5% | 49.6% |
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2fr5A00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.95 | 92.0 | 8.62e-01 | 100.0% | 86.0% |
| 1r5tA00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.94 | 91.0 | 8.34e-01 | 100.0% | 85.1% |
| 3ijfX00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.91 | 85.0 | 8.30e-01 | 100.0% | 91.1% |
| 1cttA01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.90 | 83.0 | 7.41e-01 | 100.0% | 72.8% |
| 6l08A01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.86 | 82.0 | 7.38e-01 | 100.0% | 81.5% |
| 1cttA02 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.84 | 73.0 | 7.34e-01 | 91.3% | 93.0% |
| 2z3gB00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.82 | 76.0 | 7.37e-01 | 100.0% | 89.8% |
| 3b8fB00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.80 | 75.0 | 6.90e-01 | 100.0% | 83.1% |
| 2w4lB00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.72 | 68.0 | 6.04e-01 | 100.0% | 81.5% |
| 4n0rA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.67 | 36.0 | 4.11e-01 | 83.5% | 70.6% |
| 4d10F01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.65 | 58.0 | 5.05e-01 | 100.0% | 78.8% |
| 4f7oA00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.64 | 57.0 | 4.53e-01 | 100.0% | 59.6% |
| 2o95B00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.63 | 57.0 | 4.95e-01 | 100.0% | 80.1% |
| 1r0vA01 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.58 | 36.0 | 4.28e-01 | 98.3% | 93.5% |
| 3vseB02 | 3.30.750.80 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › RNA methyltransferase domain (HRMD) like | 0.58 | 35.0 | 3.76e-01 | 73.0% | 68.0% |
| 3ga2A00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.54 | 47.0 | 3.77e-01 | 97.4% | 65.3% |
| 1u0kA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.54 | 41.0 | 3.90e-01 | 94.8% | 69.7% |
| 3ajvC02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.53 | 38.0 | 4.18e-01 | 92.2% | 94.5% |
| 1gefA00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.53 | 39.0 | 3.94e-01 | 95.7% | 75.0% |
| 2zyzC00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.53 | 37.0 | 3.95e-01 | 95.7% | 86.5% |
| 2yx1A02 | 3.30.300.110 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Met-10+ protein-like domains | 0.52 | 32.0 | 3.66e-01 | 87.8% | 89.6% |
| 2gcuA01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.51 | 45.0 | 3.63e-01 | 100.0% | 80.2% |
| 2gkpA00 | 3.40.1590.10 | Alpha Beta › 3-Layer(aba) Sandwich › NMB0488-like fold › NMB0488-like | 0.51 | 41.0 | 3.69e-01 | 87.0% | 100.0% |
| 4yo1A01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.50 | 33.0 | 3.72e-01 | 73.0% | 86.5% |
ECOD (59)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3266139 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.95 | 92.0 | 8.44e-01 | 100.0% | 82.9% |
| 4012760 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.94 | 91.0 | 7.96e-01 | 100.0% | 74.8% |
| 11432 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.94 | 91.0 | 8.34e-01 | 100.0% | 85.1% |
| 3392095 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.94 | 91.0 | 8.12e-01 | 100.0% | 88.7% |
| 3182823 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.94 | 91.0 | 8.06e-01 | 100.0% | 76.5% |
| 3017662 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.94 | 90.0 | 8.42e-01 | 100.0% | 86.8% |
| 4943358 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.93 | 90.0 | 8.55e-01 | 100.0% | 91.5% |
| 3699580 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.92 | 89.0 | 7.73e-01 | 100.0% | 83.1% |
| 4093837 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.92 | 88.0 | 8.35e-01 | 100.0% | 90.8% |
| 3598984 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.91 | 88.0 | 7.57e-01 | 100.0% | 81.2% |
| 1678258 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.90 | 85.0 | 8.17e-01 | 100.0% | 88.9% |
| 3807907 | 2492.1.1.60 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1, dCMP_cyt_deam_2 | 0.90 | 86.0 | 6.72e-01 | 100.0% | 56.4% |
| 4133420 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.90 | 83.0 | 6.89e-01 | 100.0% | 61.1% |
| 1202176 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.89 | 82.0 | 6.71e-01 | 100.0% | 57.9% |
| 3702482 | 2492.1.1.34 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › LmjF365940-deam | 0.89 | 84.0 | 7.07e-01 | 100.0% | 83.9% |
| 3676961 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.88 | 85.0 | 7.09e-01 | 100.0% | 65.0% |
| 2643545 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.86 | 82.0 | 6.97e-01 | 100.0% | 70.3% |
| 3591112 | 2492.1.1.34 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › LmjF365940-deam | 0.86 | 81.0 | 6.52e-01 | 100.0% | 87.8% |
| 4096833 | 2492.1.1.15 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_2 | 0.85 | 74.0 | 7.44e-01 | 90.4% | 93.0% |
| 4544770 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.85 | 81.0 | 7.52e-01 | 100.0% | 87.1% |
| 3290970 | 2492.1.1.45 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › PF26947 | 0.85 | 74.0 | 7.48e-01 | 100.0% | 92.2% |
| 3811811 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.84 | 80.0 | 6.84e-01 | 100.0% | 70.6% |
| 3642195 | 2492.1.1.15 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_2 | 0.84 | 73.0 | 6.78e-01 | 91.3% | 77.9% |
| 5057963 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.84 | 80.0 | 7.28e-01 | 100.0% | 92.4% |
| 4142960 | 2492.1.1.15 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_2 | 0.84 | 73.0 | 7.31e-01 | 91.3% | 93.0% |
| 11435 | 2492.1.1.15 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_2 | 0.83 | 73.0 | 6.66e-01 | 91.3% | 74.3% |
| 4212983 | 2492.1.1.15 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_2 | 0.83 | 71.0 | 7.40e-01 | 89.6% | 98.1% |
| 3988163 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.82 | 78.0 | 7.14e-01 | 100.0% | 86.1% |
| 3807414 | 2492.1.1.15 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_2 | 0.82 | 71.0 | 6.58e-01 | 91.3% | 84.6% |
| 4372406 | 2492.1.1.15 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_2 | 0.82 | 70.0 | 7.04e-01 | 89.6% | 93.0% |
| 400603 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.82 | 76.0 | 7.16e-01 | 100.0% | 84.3% |
| 4448380 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.82 | 76.0 | 7.55e-01 | 100.0% | 95.0% |
| 332272 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.80 | 75.0 | 6.90e-01 | 100.0% | 83.1% |
| 4018051 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.79 | 75.0 | 6.94e-01 | 100.0% | 85.7% |
| 4012807 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.72 | 67.0 | 5.93e-01 | 100.0% | 83.1% |
| 4342104 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.65 | 58.0 | 5.01e-01 | 100.0% | 75.1% |
| 3663319 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.65 | 59.0 | 4.93e-01 | 100.0% | 71.8% |
| 3672911 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.64 | 58.0 | 4.82e-01 | 100.0% | 78.0% |
| 3799804 | 2492.1.1.8 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › UPF0172 | 0.64 | 57.0 | 4.80e-01 | 100.0% | 65.8% |
| 4656411 | 2492.1.1.18 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB | 0.63 | 57.0 | 5.22e-01 | 100.0% | 87.3% |
| 1687168 | 2492.1.1.26 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › MPN_2A_DUB_like | 0.63 | 56.0 | 4.83e-01 | 100.0% | 77.7% |
| 3531853 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 32.0 | 3.65e-01 | 82.6% | 67.1% |
| 3514788 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.61 | 49.0 | 4.06e-01 | 87.0% | 94.9% |
| 5045133 | 2492.1.1.18 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB | 0.61 | 55.0 | 5.24e-01 | 100.0% | 91.1% |
| 2132899 | 2492.1.1.20 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › APOBEC3 | 0.60 | 48.0 | 4.15e-01 | 86.1% | 76.5% |
| 4152762 | 2492.1.1.20 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › APOBEC3 | 0.60 | 48.0 | 4.13e-01 | 87.0% | 91.6% |
| 5074348 | 2492.1.1.18 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB | 0.60 | 54.0 | 5.06e-01 | 100.0% | 85.0% |
| 3832603 | 109.4.1.1267 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif | 0.60 | 55.0 | 3.34e-01 | 100.0% | 50.5% |
| 3817317 | 109.4.1.1267 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif | 0.59 | 54.0 | 3.19e-01 | 100.0% | 40.6% |
| 3374645 | 109.4.1.1291 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif | 0.59 | 54.0 | 3.46e-01 | 100.0% | 68.5% |
| 3547002 | 2492.1.1.44 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › APOBEC4 | 0.58 | 49.0 | 3.92e-01 | 94.8% | 82.9% |
| 3683857 | 109.4.1.1285 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif | 0.57 | 52.0 | 3.25e-01 | 100.0% | 56.2% |
| 3811561 | 109.4.1.1267 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif | 0.56 | 51.0 | 3.08e-01 | 100.0% | 46.4% |
| 3669284 | 109.4.1.1738 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, DYW_deaminase, Eplus_motif, E_motif | 0.56 | 50.0 | 3.16e-01 | 100.0% | 56.9% |
| 3734418 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.55 | 40.0 | 2.92e-01 | 76.5% | 60.6% |
| 1171244 | 2008.2.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like | 0.53 | 37.0 | 3.95e-01 | 95.7% | 86.5% |
| 3228266 | 246.3.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos | 0.52 | 46.0 | 3.68e-01 | 100.0% | 82.1% |
| None | — | 0.52 | 40.0 | 4.29e-01 | 89.6% | 97.9% | |
| 4030283 | 247.1.1.11 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 | 0.51 | 43.0 | 2.98e-01 | 96.5% | 81.7% |