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qs_7_scaffold_0_curated_closed_complete_prodigal-single.1__X__X__00622
Bact-Virqs_7_scaffold_0_curated_closed_complete_prodigal-single.1__X__X__00622
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 77-190
Domain cluster:
rep: IMGVR_UViG_3300020380_000019-3300020380-Ga0211498_100003084__D16-126
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF11645.15 best | PDDEXK_5 | 68.3 | 9.80e-19 | 91.2% | 73.9% |
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ostD00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.78 | 65.0 | 6.15e-01 | 100.0% | 75.2% |
| 1gefA00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.73 | 57.0 | 5.59e-01 | 100.0% | 76.7% |
| 4lqeA00 | 3.40.1350.140 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › MepB-like | 0.69 | 62.0 | 5.66e-01 | 97.4% | 87.2% |
| 1ob8A00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.69 | 55.0 | 5.47e-01 | 100.0% | 81.5% |
| 3ajvC02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.67 | 40.0 | 4.48e-01 | 72.8% | 75.8% |
| 2eo0B00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.66 | 54.0 | 5.26e-01 | 100.0% | 79.0% |
| 1rznA00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.59 | 54.0 | 4.95e-01 | 100.0% | 84.7% |
| 1vr9A02 | 3.10.20.750 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.59 | 31.0 | 4.10e-01 | 73.7% | 100.0% |
| 6rwcA02 | 2.20.25.590 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.57 | 21.0 | 3.07e-01 | 99.1% | 82.1% |
| 3besR02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 39.0 | 3.95e-01 | 74.6% | 72.1% |
| 8d3mI01 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.56 | 40.0 | 3.31e-01 | 74.6% | 50.7% |
| 7mi4A01 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.55 | 39.0 | 3.30e-01 | 74.6% | 48.7% |
| 1tx3D00 | 3.40.600.10 | Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › DNA mismatch repair MutH/Restriction endonuclease, type II | 0.55 | 47.0 | 3.68e-01 | 93.9% | 69.3% |
| 2iz4A02 | 2.20.25.590 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.55 | 20.0 | 2.97e-01 | 87.7% | 76.2% |
| 1z5hA03 | 2.60.40.1910 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 28.0 | 3.33e-01 | 72.8% | 76.7% |
| 4da2A02 | 3.40.1350.60 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.52 | 45.0 | 4.12e-01 | 94.7% | 83.6% |
| 6p66D01 | 3.40.91.30 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.51 | 36.0 | 3.72e-01 | 100.0% | 77.1% |
| 3tefA02 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.51 | 29.0 | 3.01e-01 | 97.4% | 58.7% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1837447 | 2008.1.1.56 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_5 | 0.77 | 66.0 | 6.16e-01 | 100.0% | 74.6% |
| 5030597 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.75 | 70.0 | 6.12e-01 | 100.0% | 70.6% |
| 5036502 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.72 | 53.0 | 5.55e-01 | 78.9% | 82.9% |
| 5072012 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.70 | 42.0 | 4.69e-01 | 71.1% | 75.6% |
| 3602325 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.67 | 54.0 | 5.29e-01 | 100.0% | 78.4% |
| 4260673 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.64 | 56.0 | 5.26e-01 | 100.0% | 77.7% |
| 3976411 | 2008.1.1.58 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF3799 | 0.64 | 46.0 | 3.51e-01 | 74.6% | 42.9% |
| 5063705 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.63 | 58.0 | 5.11e-01 | 100.0% | 74.5% |
| 5026362 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.63 | 58.0 | 5.08e-01 | 100.0% | 74.5% |
| 5035680 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.59 | 52.0 | 4.46e-01 | 94.7% | 68.5% |
| 4031100 | 282.1.1.0 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain | 0.58 | 31.0 | 3.82e-01 | 74.6% | 82.9% |
| 4977038 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 34.0 | 3.58e-01 | 73.7% | 64.0% |
| 3838809 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.58 | 51.0 | 4.28e-01 | 94.7% | 63.8% |
| 3426463 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 32.0 | 3.41e-01 | 72.8% | 62.1% |
| 4162026 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.57 | 35.0 | 4.26e-01 | 94.7% | 100.0% |
| 5066595 | 2008.1.1.4 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 | 0.57 | 41.0 | 3.41e-01 | 74.6% | 49.0% |
| 3913545 | 11.1.1.129 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Interfer-bind | 0.54 | 38.0 | 3.81e-01 | 78.1% | 71.3% |
| 5044073 | 2008.1.1.11 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › SfsA | 0.54 | 48.0 | 4.09e-01 | 99.1% | 86.3% |
| 4260603 | 2008.1.1.11 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › SfsA | 0.53 | 45.0 | 3.98e-01 | 90.4% | 82.5% |
| 3397739 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 33.0 | 3.72e-01 | 88.6% | 85.9% |
| 4155974 | 2008.1.1.11 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › SfsA | 0.51 | 44.0 | 4.06e-01 | 94.7% | 84.0% |
| 3410367 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 32.0 | 3.50e-01 | 84.2% | 75.8% |
| 4342068 | 2008.1.1.11 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › SfsA | 0.51 | 45.0 | 4.07e-01 | 94.7% | 83.3% |
| 4339598 | 2008.1.1.11 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › SfsA | 0.51 | 44.0 | 4.02e-01 | 94.7% | 84.0% |
D2
medium
residues 6-41
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3tbiA00 | 1.10.10.2850 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Phage late-transcription coactivator-like | 0.73 | 58.0 | 4.85e-01 | 100.0% | 54.9% |
| 7ce1A01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.67 | 54.0 | 4.76e-01 | 88.9% | 100.0% |