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read-through_protein_P5

Euk-Vir

Melon_aphid-borne_yellows_virus

read-through_protein_P5__YP_001949872__Melon_aphid-borne_yellows_virus__471717

Identity

Accession:: YP_001949872 ↗
Protein ID:: read-through_protein_P5
Kingdom:: euk

Quality

68.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 62-198

PDB

Domain cluster: rep: putative_P3_protein__YP_010087626__Cytorhabdovirus_fragariae__2676436__D7-146

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00894.25 best	Luteo_coat	196.8	1.90e-58	100.0%	100.0%

D2 medium residues 229-241_298-322_371-381_420-457

PDB

Domain cluster: representative

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4f3jA00	2.60.120.40	Mainly Beta › Sandwich › Jelly Rolls ›	0.63	45.0	3.79e-01	74.7%	96.5%
1bev100	2.60.120.20	Mainly Beta › Sandwich › Jelly Rolls ›	0.58	40.0	2.91e-01	72.4%	66.0%
4llfD01	2.60.120.20	Mainly Beta › Sandwich › Jelly Rolls ›	0.54	37.0	2.99e-01	71.3%	93.8%
1uhvA01	2.60.40.1500	Mainly Beta › Sandwich › Immunoglobulin-like › Glycosyl hydrolase domain; family 39	0.54	39.0	3.17e-01	74.7%	70.5%
1nziA01	2.60.120.290	Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain	0.52	39.0	3.59e-01	80.5%	99.1%
6sk6A00	2.60.120.20	Mainly Beta › Sandwich › Jelly Rolls ›	0.51	35.0	2.57e-01	72.4%	69.6%
2xbzA00	2.60.40.2380	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.50	36.0	3.08e-01	73.6%	55.3%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3591145	10.32.1.0 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like	0.57	41.0	3.77e-01	73.6%	99.1%
5039150	10.1.2.0 ↗	beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED)	0.56	39.0	3.57e-01	73.6%	100.0%
4969217	10.1.2.0 ↗	beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED)	0.55	40.0	3.80e-01	77.0%	98.1%
4978088	10.1.2.0 ↗	beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED)	0.55	39.0	3.55e-01	74.7%	93.9%
3708492	10.32.1.0 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like	0.54	37.0	3.54e-01	71.3%	100.0%
2157748	10.12.1.0 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix	0.54	39.0	3.21e-01	74.7%	56.7%
3582591	10.7.1.0 ↗	beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070	0.54	38.0	3.40e-01	72.4%	64.3%
3282870	10.12.1.0 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix	0.53	38.0	3.22e-01	74.7%	63.4%
2441948	12.1.1.0 ↗	beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain	0.53	39.0	3.32e-01	75.9%	88.0%
4942975	10.1.2.0 ↗	beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED)	0.52	38.0	3.48e-01	78.2%	100.0%
3609153	10.12.1.0 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix	0.52	35.0	3.31e-01	70.1%	69.2%
3243300	10.32.1.0 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like	0.51	38.0	3.48e-01	78.2%	73.9%

D3 medium residues 242-297_323-370_382-419

PDB

Domain cluster: rep: P3-P5_polyprotein__YP_009552852__Apple_luteovirus_1__2170544__D231-433

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01690.22 best	PLRV_ORF5	49.8	3.30e-13	64.1%	18.5%